Evidence map›Paper›PMID 11840309›Full record

ArticleMolecular psychiatry2002

Segmental linkage disequilibrium within the dopamine transporter gene.

T A Greenwood, M Alexander, P E Keck, S McElroy, A D Sadovnick, R A Remick, S H Shaw, J R Kelsoe

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular psychiatry, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 45 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Trial
  4. Article
  5. Dopamine transporter gene may be associated with bipolar disorder and its personality traits.European archives of psychiatry and clinical neuroscience · 2015
    Article
  6. Association of dopamine transporter gene variants with childhood ADHD features in bipolar disorder.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2013
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. A dopamine transporter gene functional variant associated with cocaine abuse in a Brazilian sample.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Article
  13. Attention-Deficit Hyperactivity Disorder in the post-genomic era.European child & adolescent psychiatry · 2004
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 2 countries.

T A GreenwoodDeptartment of Psychiatry, University of California, San Diego and San Diego VA Health Care System, San Diego, CA, USA.
M Alexander
P E Keck
S McElroy
A D Sadovnick
R A Remick
S H Shaw
J R Kelsoe
University of California San Diego · USUniversity of Cincinnati · USSt. Paul's Hospital · CAUC San Diego Health System · USUniversity of British Columbia · CAVA San Diego Healthcare System · US

Funding

ZOVIRAX CREAM TO TREAT HERPES LABIALIS IN ADOLESCENTSM01RR000827 · NCRR · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHANG, R JEFFREY · 1985 to 2010
$74.3M
Training Program in Basic Clinical GeneticsT32GM008666 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMILTON, BRUCE A · 1998 to 2021
$8.6M
Predoctoral and Postdoctoral Training in Cancer Cell BiologyT32CA067754 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JEAN Y.J. WANG · 1995 to 2026
$6.5M
PSYCHOBIOLOGICAL STUDY OF PSYCHIATRIC DISORDERSP30MH030914 · NIMH · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI GILLIN, JOHN C · 1997 to 2001
$2.4M
COLLABORATIVE GENOMIC STUDY OF BIPOLAR DISORDERR01MH059567 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KELSOE, JOHN R. · 1998 to 2007
$1.8M
TRICYCLIC ANTIDEPRESSANTS ON COGNITIVE AND PERCEPTUAL MOTOR PERFORMANCEP50MH030914 · NIMH · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI HAUGER, RICHARD L · 1985 to 1996
–
DIAGNOSTIC CENTERS FOR PSYCHIATRY LINKAGE STUDIESU01MH046274 · NIMH · JOHNS HOPKINS UNIVERSITY · PI DEPAULO, J RAYMOND · 1989 to 1996
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DIAGNOSTIC CTR FOR LINKAGE STUDIES OF BIPOLAR DISORDERU01MH046280 · NIMH · WASHINGTON UNIVERSITY · PI REICH, THEODORE · 1989 to 1997
–
DIAGNOSTIC CENTER FOR LINKAGE STUDIES IN BIPOLAR ILLNESSU01MH046282 · NIMH · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI NURNBERGER, JOHN I · 1989 to 1997
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NCI NIH HHS 5T32CA67754NCRR NIH HHS M01 RR00827NIGMS NIH HHS 1T32GM08666NIMH NIH HHS MH30914NIMH NIH HHS MH47612NIMH NIH HHS MH59567NIMH NIH HHS UO1 MH46274NIMH NIH HHS UO1 MH46280NIMH NIH HHS UO1 MH46282
6 · The paper itself

Abstract

The dopamine transporter gene (DAT) has been implicated in a variety of disorders, including bipolar disorder, attention-deficit hyperactivity disorder, cocaine-induced paranoia, Tourette's syndrome, and Parkinson's disease. As no clear functional polymorphism has been identified to date, studies rely on linkage disequilibrium (LD) to assess the possible genetic contribution of DAT to the various disorders. A better understanding of the complex structure of LD across the gene is thus critical for an accurate interpretation of the results of such studies, and may facilitate the mapping of the actual functional variants. In the process of characterizing the extent of variation within the DAT gene, we have identified a number of single nucleotide polymorphisms (SNPs) suitable for LD studies, 14 of which have been analyzed, along with a 3' repeat polymorphism, in a sample of 120 parent-proband triads. Calculations of pairwise LD between the SNPs in the parental haplotypes revealed a high degree of LD (P < 0.00001) in the 5' (distal promoter through intron 6) and 3' (exon 9 through exon 15) regions of DAT. This segmental LD pattern is maintained over approximately 27 kb and 20 kb in these two regions, respectively, with very little significant LD between them, possibly due to the presence of a recombination hotspot located near the middle of the gene. These analyses of the DAT gene thus reveal a complex structure resulting from both recombination and mutation, knowledge of which may be invaluable to the design of future studies.

Indexed as

Linkage DisequilibriumMembrane GlycoproteinsNerve Tissue ProteinsDopamine Plasma Membrane Transport ProteinsFamily HealthGenetic VariationHaplotypesHumansMembrane Transport ProteinsPolymorphism, Single NucleotideDopamine Plasma Membrane Transport ProteinsMembrane GlycoproteinsMembrane Transport ProteinsNerve Tissue ProteinsSLC6A3 protein, human

Identifiers

PMID11840309
OpenAlexW2129408897

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.