Evidence map›Paper›PMID 11839180›Full record

ArticlePhilosophical transactions of the Royal Society of London. Series B, Biological sciences2002

Mining the Plasmodium genome database to define organellar function: what does the apicoplast do?

David S Roos, Michael J Crawford, Robert G K Donald, Martin Fraunholz, Omar S Harb, Cynthia Y He, Jessica C Kissinger, Michael K Shaw, Boris Striepen

Abstract read
In one paragraph

Article in Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Peroxiredoxins in parasites.Antioxidants & redox signaling · 2012
    Review
  8. The apicomplexan plastid and its evolution.Cellular and molecular life sciences : CMLS · 2011
    Review
  9. David Roos. Interview by H. Craig Mak.Nature biotechnology · 2011
    Article
  10. Review
  11. Article
  12. metaTIGER: a metabolic evolution resource.Nucleic acids research · 2009
    Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

David S RoosDepartment of Biology, University of Pennsylvania, Philadelphia, PA 19104-6018, USA. droos@sas.upenn.edu
Michael J Crawford
Robert G K Donald
Martin Fraunholz
Omar S Harb
Cynthia Y He
Jessica C Kissinger
Michael K Shaw
Boris Striepen

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Apicomplexan species constitute a diverse group of parasitic protozoa, which are responsible for a wide range of diseases in many organisms. Despite differences in the diseases they cause, these parasites share an underlying biology, from the genetic controls used to differentiate through the complex parasite life cycle, to the basic biochemical pathways employed for intracellular survival, to the distinctive cell biology necessary for host cell attachment and invasion. Different parasites lend themselves to the study of different aspects of parasite biology: Eimeria for biochemical studies, Toxoplasma for molecular genetic and cell biological investigation, etc. The Plasmodium falciparum Genome Project contributes the first large-scale genomic sequence for an apicomplexan parasite. The Plasmodium Genome Database (http://PlasmoDB.org) has been designed to permit individual investigators to ask their own questions, even prior to formal release of the reference P. falciparum genome sequence. As a case in point, PlasmoDB has been exploited to identify metabolic pathways associated with the apicomplexan plastid, or 'apicoplast' - an essential organelle derived by secondary endosymbiosis of an alga, and retention of the algal plastid.

Indexed as

Databases, GeneticGenome, ProtozoanAnimalsCell CompartmentationComputational BiologyDNA, ProtozoanEndocytosisEukaryotaEvolution, MolecularGenes, ProtozoanGene Transfer, HorizontalOrganellesPhylogenyPlasmodium falciparumProtozoan ProteinsSymbiosisDNA, ProtozoanProtozoan Proteins

Identifiers

PMID11839180
PMCPMC1692924

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.