Evidence map›Paper›PMID 11828012›Full record

ArticleThe Journal of experimental medicine2002

Role for mismatch repair proteins Msh2, Mlh1, and Pms2 in immunoglobulin class switching shown by sequence analysis of recombination junctions.

Carol E Schrader, Joycelyn Vardo, Janet Stavnezer

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 133 citations in OpenAlex.

  1. Article
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  9. Esophageal cancer genetics in South Africa.Clinical and experimental gastroenterology · 2019
    Review
  10. Article
  11. Review
  12. Article
  13. Physiological Roles of DNA Double-Strand Breaks.Journal of nucleic acids · 2017
    Review
  14. Article
  15. Article
  16. Article
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  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Carol E SchraderDepartment of Molecular Genetics and Microbiology and Program in Immunology and Virology, University of Massachusetts Medical School, Worcester, MA 01655, USA.
Joycelyn Vardo
Janet Stavnezer
University of Massachusetts Chan Medical School · US

Funding

MOLECULAR BASIS OF IMMUNOGLOBULIN HEAVY CHAIN SWITCHR01AI023283 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SCHRADER, CAROL E · 1985 to 2014
$5.8M
NIAID NIH HHS R01 AI023283NIAID NIH HHS R01 AI23283
6 · The paper itself

Abstract

B cells from mice deficient in mismatch repair (MMR) proteins show decreased ability to undergo class switch recombination in vitro and in vivo. The deficit is not accompanied by any reduction in cell viability or alterations in the cell cycle in B cells cultured in vitro. To assess the role of MMR in switching we examined the nucleotide sequences of Smicro-Sgamma3 recombination junctions in splenic B cells induced in culture to switch to IgG3. The data demonstrate clear differences in the sequences of switch junctions in wild-type B cells in comparison with Msh2-, Mlh1-, and Pms2-deficient B cells. Sequences of switch junctions from Msh2-deficient cells showed decreased lengths of microhomology between Smicro and Sgamma3 relative to junctions from wild-type cells and an increase in insertions, i.e., nucleotides which do not appear to be derived from either the Smicro or Sgamma3 parental sequence. By contrast, 23% of junctions from Mlh1- and Pms2-deficient cells occurred at unusually long stretches of microhomology. The data indicate that MMR proteins are directly involved in class switching and that the role of Msh2 differs from that of Mlh1 and Pms2.

Indexed as

Base Pair MismatchDNA Repair EnzymesImmunoglobulin Class SwitchingAdaptor Proteins, Signal TransducingAdenosine TriphosphatasesAnimalsBase SequenceB-LymphocytesCarrier ProteinsDNADNA-Binding ProteinsDNA RepairIn Vitro TechniquesMiceMice, Inbred C57BLMice, KnockoutAdaptor Proteins, Signal TransducingAdenosine TriphosphatasesCarrier ProteinsDNADNA-Binding ProteinsDNA Repair EnzymesMismatch Repair Endonuclease PMS2MLH1 protein, humanMlh1 protein, mouseMsh2 protein, mouseMutL Protein Homolog 1MutS Homolog 2 ProteinNeoplasm ProteinsNuclear ProteinsPms2 protein, mouseProto-Oncogene Proteins

Identifiers

PMID11828012
PMCPMC2193596
OpenAlexW2155947081

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.