Evidence map›Paper›PMID 11826311›Full record

ArticleThe Plant cell2002

Repair of damaged DNA by Arabidopsis cell extract.

Anatoliy Li, David Schuermann, Francesca Gallego, Igor Kovalchuk, Bruno Tinland

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The Plant cell, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Article
  3. Base Excision DNA Repair in Plants:International journal of molecular sciences · 2023
    Review
  4. Chloroplastic RecA protein fromPhysiology and molecular biology of plants : an international journal of functional plant biology · 2022
    Article
  5. Article
  6. Dyes in aquaculture and reference points for action.EFSA journal. European Food Safety Authority · 2017
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Single-nucleotide and long-patch base excision repair of DNA damage in plants.The Plant journal : for cell and molecular biology · 2009
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Anatoliy LiInstitute of Plant Sciences, Eidgenössische Technishe Hochschule, Universitätsstr 2, CH-8092 Zürich, Switzerland.
David Schuermann
Francesca Gallego
Igor Kovalchuk
Bruno Tinland
Friedrich Miescher Institute · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

All living organisms have to protect the integrity of their genomes from a wide range of genotoxic stresses to which they are inevitably exposed. However, understanding of DNA repair in plants lags far behind such knowledge in bacteria, yeast, and mammals, partially as a result of the absence of efficient in vitro systems. Here, we report the experimental setup for an Arabidopsis in vitro repair synthesis assay. The repair of plasmid DNA treated with three different DNA-damaging agents, UV light, cisplatin, and methylene blue, after incubation with whole-cell extract was monitored. To validate the reliability of our assay, we analyzed the repair proficiency of plants depleted in AtRAD1 activity. The reduced repair of UV light- and cisplatin-damaged DNA confirmed the deficiency of these plants in nucleotide excision repair. Decreased repair of methylene blue-induced oxidative lesions, which are believed to be processed by the base excision repair machinery in mammalian cells, may indicate a possible involvement of AtRAD1 in the repair of oxidative damage. Differences in sensitivity to DNA polymerase inhibitors (aphidicolin and dideoxy TTP) between plant and human cell extracts were observed with this assay.

Indexed as

DNA-Binding ProteinsAphidicolinArabidopsisCell ExtractsCisplatinDideoxynucleotidesDNA DamageDNA RepairEndonucleasesGenome, PlantHumansMethylene BlueNucleic Acid Synthesis InhibitorsOxidative StressPlants, Genetically ModifiedThymine Nucleotides3'-nitro-2',3'-dideoxythymidine 5'-triphosphateAphidicolinCell ExtractsCisplatinDideoxynucleotidesDNA-Binding ProteinsEndonucleasesMethylene BlueNucleic Acid Synthesis InhibitorsThymine Nucleotides

Identifiers

PMID11826311
PMCPMC150563
OpenAlexW2166221068

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.