Evidence map›Paper›PMID 11823214›Full record

ArticleApplied and environmental microbiology2002

Horizontal transfer of the plant virulence gene, nec1, and flanking sequences among genetically distinct Streptomyces strains in the Diastatochromogenes cluster.

R A Bukhalid, T Takeuchi, D Labeda, Rosemary Loria

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Occurrence ofBiology · 2026
    Article
  2. Article
  3. Article
  4. Investigation ofPathogens (Basel, Switzerland) · 2020
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Horizontal gene transfer in plants.Functional & integrative genomics · 2014
    Review
  10. Article
  11. Article
  12. Nitroaromatic compounds, from synthesis to biodegradation.Microbiology and molecular biology reviews : MMBR · 2010
    Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

R A BukhalidDepartment of Plant Pathology, 344 Plant Science Building, Cornell University, Ithaca, NY 14853, USA.
T Takeuchi
D Labeda
Rosemary Loria

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Evidence for the horizontal transfer of a pathogenicity island (PAI) carrying the virulence gene nec1 and flanking sequences among Streptomyces strains in the Diastatochromogenes cluster is presented. Plant-pathogenic, thaxtomin-producing Streptomyces strains, previously classified as S. scabiei based on the conventionally used phenotypic characteristics, were found to be genetically distinct from the type strain of S. scabiei based on DNA relatedness and 16S rDNA sequence analysis. Pairwise DNA-DNA hybridizations between some of these strains and the S. scabiei type strain were as low as 36%, a value much below what is conventionally accepted for species identity (70%). The sequence of the nec1 gene, however, was identical in all the S. scabiei and S. scabiei-like strains tested, irrespective of their DNA relatedness to the type strain of S. scabiei, their geographic origin, or the isolation host. Furthermore, a 26-kb DNA fragment including and flanking nec1 was also conserved among these strains based on restriction and Southern analyses. These data indicate that the etiology of potato scab is more complex than previously recognized; this result has important implications for potato scab management strategies. Previous research has suggested that horizontal transfer of a PAI was the mechanism for evolution of pathogenicity in S. acidiscabies and S. turgidiscabies, species that lie outside of the Diastatochromogenes cluster. Data presented here support this model and indicate that PAI transfer also has occurred frequently in species closely related to S. scabiei.

Indexed as

Gene Transfer, HorizontalArachisBacterial ProteinsBase SequenceDNA, RibosomalIndolesMolecular Sequence DataPhenotypePhylogenyPiperazinesPlant DiseasesRNA, Ribosomal, 16SSequence AlignmentSequence Analysis, DNASolanum tuberosumStreptomycesBacterial ProteinsDNA, RibosomalIndolesNEC1 protein, Streptomyces scabiesPiperazinesRNA, Ribosomal, 16Sthaxtomine A

Identifiers

PMID11823214
PMCPMC126678

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.