Evidence map›Paper›PMID 11818556›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2002

The unexpected landscape of in vivo somatic mutation in a human epithelial cell lineage.

Lorel M Colgin, Alden F M Hackmann, Mary J Emond, Raymond J Monnat

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. Somatic mutations in aging, cancer and neurodegeneration.Mechanisms of ageing and development · 2012
    Review
  7. Damage-induced localized hypermutability.Cell cycle (Georgetown, Tex.) · 2011
    Article
  8. Article
  9. Article
  10. Article
  11. Polycystic liver diseases.Digestive and liver disease : official journal of the Italian Society of Gastroenterology and the Italian Association for the Study of the Liver · 2010
    Review
  12. Article
  13. Article
  14. Mutations in clusters and showers.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
  15. Evidence for mutation showers.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
  16. ADPKD: molecular characterization and quest for treatment.Clinical and experimental nephrology · 2005
    Review
  17. Clusters of mutations from transient hypermutability.Proceedings of the National Academy of Sciences of the United States of America · 2005
    Article
  18. Article
  19. Genome dynamics in aging mice.Genome research · 2002
    Article
  20. Too many mutants with multiple mutations.Critical reviews in biochemistry and molecular biology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Lorel M ColginDepartment of Pathology, University of Washington, Box 357705, Seattle, WA 98195-7705, USA.
Alden F M Hackmann
Mary J Emond
Raymond J Monnat
University of Washington · US

Funding

XENOBIOTIC BIOTRANSFORMATION AND DISPOSITIONP30ES007033 · NIEHS · UNIVERSITY OF WASHINGTON · PI Sheela Sathyanarayana · 1995 to 2026
$42.5M
GENETIC APPROACHES TO AGING RESEARCHT32AG000057 · NIA · UNIVERSITY OF WASHINGTON · PI RABINOVITCH, PETER S · 1985 to 2019
$14.2M
STATISTICAL ANALYSIS OF GENETIC EVENTS IN TUMORIGENESISR29CA077607 · NCI · UNIVERSITY OF WASHINGTON · PI EMOND, MARY J · 1998 to 2003
$309k
NCI NIH HHS R29 CA077607NCI NIH HHS R29 CA77607NIA NIH HHS AG00057NIA NIH HHS T32 AG000057NIEHS NIH HHS P30 ES007033NIEHS NIH HHS P30ES07033
6 · The paper itself

Abstract

Few data exist on somatic mutation in the epithelial cell lineages that play a central role in human biology and disease. To delineate the "landscape" of somatic mutation in a human epithelial cell lineage, we determined the frequency and molecular nature of somatic mutations occurring in vivo in the X-linked HPRT gene of kidney tubular epithelial cells. Kidney epithelial mutants were frequent (range 0.5 to 4.2 x 10(-4)) and contained a high proportion of unreported HPRT base substitutions, -1-bp deletions and multiple mutations. This spectrum of somatic mutation differed from HPRT mutations identified in human peripheral blood T lymphocytes and from germ-line HPRT mutations identified in Lesch-Nyhan syndrome or hyperuricemia patients. Our results indicate that DNA damage and mutagenesis may have unusual or mechanistically interesting features in kidney tubular epithelium, and that somatic mutation may play a more important role in human kidney disease than has been previously appreciated.

Indexed as

MutationCells, CulturedClone CellsDNA Transposable ElementsExonsGene AmplificationHumansHypoxanthine PhosphoribosyltransferaseKidney TubulesMutation, MissenseOpen Reading FramesReverse Transcriptase Polymerase Chain ReactionSequence DeletionThioguanineT-LymphocytesUrotheliumDNA Transposable ElementsHypoxanthine PhosphoribosyltransferaseThioguanine

Identifiers

PMID11818556
PMCPMC122209
OpenAlexW2076438023

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.