Evidence map›Paper›PMID 11812855›Full record

ArticleNucleic acids research2001

The trypanosome homolog of human p32 interacts with RBP16 and stimulates its gRNA binding activity.

M L Hayman, M M Miller, D M Chandler, C C Goulah, L K Read

Open access · greenAbstract read
In one paragraph

Article in Nucleic acids research, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 42 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

M L HaymanDepartment of Microbiology and Witebsky Center for Microbial Pathogenesis and Immunology, SUNY Buffalo School of Medicine, 138 Farber Hall, Buffalo, NY 14214, USA.
M M Miller
D M Chandler
C C Goulah
L K Read
University at Buffalo, State University of New York · US

Funding

MITOCHONDRIAL RNA METABOLISM IN TRYPANOSOMA BRUCEIR01AI047329 · NIAID · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI READ, LAURIE K. · 2000 to 2004
$1.5M
Mitochondrial RNA metabolism in Trypanosoma bruceiR56AI047329 · NIAID · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI READ, LAURIE K. · 2007 to 2007
$380k
PROTEINS INVOLVED IN KRNA EDITINGR29GM053502 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI READ, LAURIE K. · 1996 to 2000
$136k
NIAID NIH HHS AI47329NIAID NIH HHS R01 AI047329NIAID NIH HHS R56 AI047329NIGMS NIH HHS GM53502
6 · The paper itself

Abstract

RBP16 is a guide RNA (gRNA)-binding protein that was shown through immunoprecipitation experiments to interact with approximately 30% of total gRNAs in Trypanosoma brucei mitochondria. To gain insight into the biochemical function of RBP16, we used affinity chromatography and immunoprecipitation to identify RBP16 protein binding partners. By these methods, RBP16 does not appear to stably interact with the core editing machinery. However, fractionation of mitochondrial extracts on MBP-RBP16 affinity columns consistently isolated proteins of 12, 16, 18 and 22 kDa that were absent from MBP control columns. We describe here our analysis of one RBP16-associated protein, p22. The predicted p22 protein has significant sequence similarity to a family of multimeric, acidic proteins that includes human p32 and Saccharomyces cerevisiae mam33p. Glutaraldehyde crosslinking of recombinant p22 identified homo-multimeric forms of the protein, further substantiating its homology to p32. We confirmed the p22-RBP16 interaction and demonstrated that the two proteins bind each other directly by ELISA utilizing recombinant p22 and RBP16. p32 family members have been reported to modulate viral and cellular pre-mRNA splicing, in some cases by perturbing interaction of their binding partners with RNA. To determine whether p22 similarly affects the gRNA binding properties of RBP16, we titrated recombinant p22 into UV crosslinking assays. These experiments revealed that p22 significantly stimulates the gRNA binding capacity of RBP16. Thus, p22 has the potential to be a regulatory factor in T.brucei mitochondrial gene expression by modulating the RNA binding properties of RBP16.

Indexed as

Amino Acid SequenceAnimalsChromatography, AffinityCloning, MolecularDNA, ComplementaryMolecular Sequence DataProtein BindingProtozoan ProteinsRNA-Binding ProteinsRNA, Guide, KinetoplastidaSequence AlignmentSequence Analysis, DNASequence Homology, Amino AcidTrypanosoma brucei bruceiDNA, ComplementaryProtozoan ProteinsRBP16 protein, TrypanosomaRNA-Binding ProteinsRNA, Guide, Kinetoplastida

Identifiers

PMID11812855
PMCPMC97595
OpenAlexW2149459309

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.