Evidence map›Paper›PMID 11809891›Full record

ArticleNucleic acids research2002

Analysis of the spacing between the two palindromes of activation sequence-1 with respect to binding to different TGA factors and transcriptional activation potential.

Stefanie Krawczyk, Corinna Thurow, Ricarda Niggeweg, Christiane Gatz

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
11.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 87 citations in OpenAlex.

  1. Changes in soluble sugars and the expression of sugar transporter protein genes in strawberry crowns responding toPhysiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Article
  2. Article
  3. Article
  4. UnravelingPlants (Basel, Switzerland) · 2022
    Article
  5. Review
  6. Article
  7. Multiple levels of crosstalk in hormone networks regulating plant defense.The Plant journal : for cell and molecular biology · 2021
    Review
  8. Article
  9. The regulation ofPlant direct · 2019
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Stefanie KrawczykAlbrecht-von-Haller-Institut fuer Pflanzenwissenschaften, Universitaet Goettingen, Untere Karspuele 2, 37073 Goettingen, Germany.
Corinna Thurow
Ricarda Niggeweg
Christiane Gatz
University of Göttingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In higher plants, activation sequence-1 (as-1) of the cauliflower mosaic virus 35S promoter mediates both salicylic acid- and auxin-inducible transcriptional activation. Originally found in viral and T-DNA promoters, as-1-like elements are also functional elements of plant promoters activated in the course of a defence response upon pathogen attack. as-1-like elements are characterised by two imperfect palindromes with the palindromic centres being spaced by 12 bp. They are recognised by plant nuclear as-1-binding factor ASF-1, the major component of which is basic/leucine zipper (bZIP) protein TGA2.2 (approximately 80%) in Nicotiana tabacum. In electrophoretic mobility shift assays, ASF-1 as well as bZIP proteins TGA2.2, TGA2.1 and TGA1a showed a 3-10-fold reduced binding affinity to mutant as-1 elements encoding insertions of 2, 4, 6, 8 or 10 bp between the palindromes, respectively. This correlated with a 5-10-fold reduction in transcriptional activation from these elements in transient expression assays. Although ASF-1 and TGA factors bound efficiently to a mutant element carrying a 2 bp deletion between the palindromes [as-1/(-2)], the latter was strongly compromised with respect to mediating gene expression in vivo. A fusion protein consisting of TGA2.2 and a constitutive activation domain mediated transactivation from as-1/(-2) demonstrating binding of TGA factors in vivo. We therefore conclude that both DNA binding and transactivation require optimal positioning of TGA factors on the as-1 element.

Indexed as

Nuclear ProteinsTranscriptional ActivationBase SequenceBasic-Leucine Zipper Transcription FactorsBinding SitesDNA-Binding ProteinsDNA, ViralElectrophoretic Mobility Shift AssayGene Expression Regulation, ViralGenes, ReporterNicotianaPlant ProteinsPlant VirusesPromoter Regions, GeneticProtein BindingProtein Structure, TertiaryBasic-Leucine Zipper Transcription FactorsDNA-Binding ProteinsDNA, ViralHBP-1b protein, plantNuclear ProteinsPlant ProteinsTGA1a protein, Nicotiana tabacumTranscription Factors

Identifiers

PMID11809891
PMCPMC100291
OpenAlexW2045543348

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.