Evidence map›Paper›PMID 11806920›Full record

ArticleBiophysical journal2002

Carboxyl tail prevents yeast K(+) channel closure: proposal of an integrated model of TOK1 gating.

Stephen H Loukin, Yoshiro Saimi

Abstract read
In one paragraph

Article in Biophysical journal, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Feeling the hidden mechanical forces in lipid bilayer is an original sense.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Review
  4. Review
  5. Ion channels in microbes.Physiological reviews · 2008
    Review
  6. Article
  7. Microbial K+ channels.The Journal of general physiology · 2005
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Stephen H LoukinLaboratory of Molecular Biology, University of Wisconsin, Madison, Wisconsin 53706 USA. shloukin@facstaff.wisc.edu
Yoshiro Saimi

Funding

NIGMS NIH HHS GM 54867
6 · The paper itself

Abstract

TOK1 encodes the channel responsible for the prominent outward K(+) current of the yeast plasma membrane. It can dwell in several impermeable states, including a rapidly transiting, K(+)-electromotive-force-dependent "R" (rectifying) state, a voltage-independent "IB" (interburst) state, and a set of [K(+)](ext) and voltage-dependent "C" (closed) states. Whereas evidence suggests that the C states result from the constriction of an inner gate at the cytosolic end of the pore, R is most likely an intrinsic gating property of the K(+) filter. Here, we present evidence that Tok1's carboxyl-tail domain also plays an intimate role in channel gating by dynamically preventing inner-gate closures. We present an integrated model of TOK1 gating in which the filter gate, inner gate, and carboxyl tail interact to produce the various phenomenological states. Both wild-type and tailless behaviors can be replicated using Monte Carlo computer simulations based on this model.

Indexed as

Saccharomyces cerevisiae ProteinsDNA RepairElectrophysiologyGene DeletionIonsModels, BiologicalMonte Carlo MethodMutationPlasmidsPotassiumPotassium ChannelsProtein Structure, TertiarySaccharomyces cerevisiaeIonsPotassiumPotassium ChannelsSaccharomyces cerevisiae ProteinsTOK1 protein, S cerevisiae

Identifiers

PMID11806920
PMCPMC1301887

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.