Evidence map›Paper›PMID 11799165›Full record

ArticleJournal of virology2002

Human immunodeficiency virus type 1 (HIV-1) quasispecies at the sites of Mycobacterium tuberculosis infection contribute to systemic HIV-1 heterogeneity.

Kalonji R Collins, Miguel E Quiñones-Mateu, Mianda Wu, Henry Luzze, John L Johnson, Christina Hirsch, Zahra Toossi, Eric J Arts

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 1 synthesis or guideline pooled it, 69 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Kalonji R CollinsDivision of Infectious Diseases, Department of Medicine, Case Western Reserve University, Cleveland, Ohio 44106, USA.
Miguel E Quiñones-Mateu
Mianda Wu
Henry Luzze
John L Johnson
Christina Hirsch
Zahra Toossi
Eric J Arts
Case Western Reserve University · USCleveland Clinic · USMulago Hospital · UG

Funding

WG3: HIV, Co-infections and Co-morbiditiesP30AI036219 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI CHERYL M CAMERON · 1994 to 2026
$50.0M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007250 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI HUANG, ALEX YEE-CHEN · 1985 to 2023
$33.4M
Impact of HIV-1 Fitness on Disease ProgressionR01AI049170 · NIAID · UNIVERSITY OF WESTERN ONTARIO · PI ARTS, ERIC J · 2002 to 2024
$6.8M
INTERACTION OF M TUBERCULOSIS AND HIV IN THE LUNGR01HL051636 · NHLBI · CASE WESTERN RESERVE UNIVERSITY · PI TOOSSI, ZAHRA TOOSSI · 1993 to 2014
$4.9M
HIV EVOLUTION AND ROLE OF CHEMOKINES IN THE LUNGK01HL067610 · NHLBI · CLEVELAND CLINIC LERNER COL/MED-CWRU · PI QUINONES-MATEU, MIGUEL E · 2000 to 2004
$660k
Impact of Tuberculosis on HIV DiseaseR56HL051636 · NHLBI · CASE WESTERN RESERVE UNIVERSITY · PI TOOSSI, ZAHRA TOOSSI · 2009 to 2009
$305k
NHLBI NIH HHS HL51363-06NHLBI NIH HHS K01 HL067610NHLBI NIH HHS K01-HL67610-01NHLBI NIH HHS R01 HL051636NHLBI NIH HHS R56 HL051636NIAID NIH HHS AI32619NIAID NIH HHS P30 AI036219NIAID NIH HHS R01 AI049170NIGMS NIH HHS T32 GM007250PHS HHS A1-45244
6 · The paper itself

Abstract

We have recently reported an increased heterogeneity in the human immunodeficiency virus type 1 (HIV-1) envelope gene (env) in HIV-1-infected patients with pulmonary tuberculosis (TB) compared to patients with HIV-1 alone. This increase may be a result of dissemination of lung-derived HIV-1 isolates from sites of Mycobacterium tuberculosis infection and/or the systemic activation of the immune system in response to TB. To distinguish between these two mechanisms, blood and pleural fluid samples were obtained from HIV-1-infected patients with active pleural TB in Kampala, Uganda (CD4 cell counts of 34 to 705 cells/microl, HIV-1 plasma loads of 2,400 to 280,000 RNA copies/ml, and HIV-1 pleural loads of 7,600 to 4,500,000 RNA copies/ml). The C2-C3 coding region of HIV-1 env was PCR amplified from lysed peripheral blood mononuclear cells and pleural fluid mononuclear cells and reverse transcriptase-PCR amplified from plasma and pleural fluid HIV-1 virions of eight HIV-1 patients with pleural TB. Phylogenetic and phenetic analyses revealed a compartmentalization of HIV-1 quasispecies between blood and pleural space in four of eight patients, with migration events between the compartments. There was a trend for a greater genetic heterogeneity in the pleural space, which may be the result of an M. tuberculosis-mediated increase in HIV-1 replication and/or selection pressure at the site of infection. Collectively, these findings suggest that HIV-1 quasispecies in the M. tuberculosis-infected pleural space may leak into the systemic circulation and lead to increased systemic HIV-1 heterogeneity during TB.

Indexed as

Genetic VariationAdultAIDS-Related Opportunistic InfectionsDNA, ViralFemaleGene Products, envHIV-1HIV InfectionsHumansLeukocytes, MononuclearMaleMolecular Sequence DataMycobacterium tuberculosisPhylogenyPleural EffusionSequence Analysis, DNADNA, ViralGene Products, env

Identifiers

PMID11799165
PMCPMC135892
OpenAlexW2113584120

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.