Evidence map›Paper›PMID 11792834›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2002

Genomic structure and functional control of the Dlx3-7 bigene cluster.

Kenta Sumiyama, Steven Q Irvine, David W Stock, Kenneth M Weiss, Kazuhiko Kawasaki, Nobuyoshi Shimizu, Cooduvalli S Shashikant, Webb Miller, Frank H Ruddle

Open access · greenAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 70 citations in OpenAlex.

  1. Cells · 2022
    Review
  2. Cancers · 2021
    Review
  3. Article
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  9. Non-parsimonious evolution of hagfish Dlx genes.BMC evolutionary biology · 2013
    Article
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  11. Theria-specific homeodomain and cis-regulatory element evolution of the Dlx3-4 bigene cluster in 12 different mammalian species.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2012
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  12. Article
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  18. The relationship between dlx and gad1 expression indicates highly conserved genetic pathways in the zebrafish forebrain.Developmental dynamics : an official publication of the American Association of Anatomists · 2010
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Kenta SumiyamaDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06511, USA.
Steven Q Irvine
David W Stock
Kenneth M Weiss
Kazuhiko Kawasaki
Nobuyoshi Shimizu
Cooduvalli S Shashikant
Webb Miller
Frank H Ruddle
Pennsylvania State University · USKeio University · JPUniversity of Colorado Boulder · USYale University · US

Funding

GENETIC ANALYSIS OF SOMATIC CELL POPULATIONR01GM009966 · NIGMS · YALE UNIVERSITY · PI RUDDLE, FRANK H · 1985 to 2006
$2.2M
GENETIC ANALYSIS OF SOMATIC CELL POPULATIONR37GM009966 · NIGMS · YALE UNIVERSITY · PI RUDDLE, FRANK H · 1990 to 1994
–
NIGMS NIH HHS GM 09966NIGMS NIH HHS R01 GM009966
6 · The paper itself

Abstract

The Dlx genes are involved in early vertebrate morphogenesis, notably of the head. The six Dlx genes of mammals are arranged in three convergently transcribed bigene clusters. In this study, we examine the regulation of the Dlx3-7 cluster of the mouse. We obtained and sequenced human and mouse P1 clones covering the entire Dlx3-7 cluster. Comparative analysis of the human and mouse sequences revealed several highly conserved noncoding regions within 30 kb of the Dlx3-7-coding regions. These conserved elements were located both 5' of the coding exons of each gene and in the intergenic region 3' of the exons, suggesting that some enhancers might be shared between genes. We also found that the protein sequence of Dlx7 is evolving more rapidly than that of Dlx3. We conducted a functional study of the 79-kb mouse genomic clone to locate cis-element activity able to reproduce the endogenous expression pattern by using transgenic mice. We inserted a lacZ reporter gene into the first exon of the Dlx3 gene by using homologous recombination in yeast. Strong lacZ expression in embryonic (E) stage E9.5 and E10.5 mouse embryos was found in the limb buds and first and second visceral arches, consistent with the endogenous Dlx3 expression pattern. This result shows that the 79-kb region contains the major cis-elements required to direct the endogenous expression of Dlx3 at stage E10.5. To test for enhancer location, we divided the construct in the mid-intergenic region and injected the Dlx3 gene portion. This shortened fragment lacking Dlx7-flanking sequences is able to drive expression in the limb buds but not in the visceral arches. This observation is consistent with a cis-regulatory enhancer-sharing model within the Dlx bigene cluster.

Indexed as

Multigene FamilyAnimalsBase SequenceConserved SequenceDNAEvolution, MolecularGene Expression Regulation, DevelopmentalGenomeGenome, HumanHomeodomain ProteinsHumansIn Situ HybridizationMiceMice, TransgenicModels, GeneticMolecular Sequence DataDistal-less homeobox proteinsDlx4 protein, mouseDNAHomeodomain ProteinsTranscription Factors

Identifiers

PMID11792834
PMCPMC117382
OpenAlexW1965365026

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.