Evidence map›Paper›PMID 11791208›Full record

ArticleAmerican journal of human genetics2002

Quantitative analyses of SMN1 and SMN2 based on real-time lightCycler PCR: fast and highly reliable carrier testing and prediction of severity of spinal muscular atrophy.

Markus Feldkötter, Verena Schwarzer, Radu Wirth, Thomas F Wienker, Brunhilde Wirth

3 registry-linked trialsOpen access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to 3 registered trials, which are not on this map. Cited by 449 papers, 7 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
449citing papers in PubMed, 7 pooled it
13.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00227266 phase2completednot on this mapstarted 2005, after this paper: background citation

Multi-center Phase II Trial of Valproic Acid and Carnitine in Patients With Spinal Muscular Atrophy (SMA CARNI-VAL Trial)

TypeinterventionalSponsorUniversity of UtahRan2005 to 2007Enrolled94ConditionsSpinal Muscular AtrophyArmsValproic Acid and Levocarnitine, Placebo
NCT00374075 phase1completednot on this mapstarted 2003, after this paper: background citation

In Vivo Study of Safety, Tolerability and Dosing Effect on SMN mRNA and Protein Levels of Valproic Acid in Patients With Spinal Muscular Atrophy

TypeinterventionalSponsorUniversity of UtahRan2003 to 2006Enrolled42ConditionsSpinal Muscular AtrophyArmsValproic Acid
NCT00661453 phase1 / phase2completednot on this mapstarted 2008, after this paper: background citation

Phase I/II Trial of Valproic Acid and Carnitine in Infants With Spinal Muscular Atrophy Type I (CARNI-VAL Type I)

TypeinterventionalSponsorUniversity of UtahRan2008 to 2012Enrolled40ConditionsSpinal Muscular Atrophy Type IArmsValproic Acid and Levocarnitine
3 · Its place in the literature

Who cites it

449 citing papers in PubMed, 7 syntheses or guidelines pooled it, 1,003 citations in OpenAlex.

  1. Pooled it
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  4. Nusinersen in Adults with 5q Spinal Muscular Atrophy: a Systematic Review and Meta-analysis.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2022
    Pooled it
  5. Pooled it
  6. Drug treatment for spinal muscular atrophy types II and III.The Cochrane database of systematic reviews · 2020
    Pooled it
  7. Drug treatment for spinal muscular atrophy type I.The Cochrane database of systematic reviews · 2019
    Pooled it
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389 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Markus FeldkötterInstitute of Human Genetics, University Clinic, Rheinische Friedrich-Wilhelms University Bonn, Bonn, Germany.
Verena Schwarzer
Radu Wirth
Thomas F Wienker
Brunhilde Wirth
Institute of Human Genetics · PLUniversity of Bonn · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Spinal muscular atrophy (SMA) is a common autosomal recessive disorder in humans, caused by homozygous absence of the survival motor neuron gene 1 (SMN1). SMN2, a copy gene, influences the severity of SMA and may be used in somatic gene therapy of patients with SMA in the future. We present a new, fast, and highly reliable quantitative test, based on real-time LightCycler PCR that amplifies either SMN1 or SMN2. The SMN1 copies were determined and validated in 329 carriers and controls. The specificity of the test is 100%, whereas the sensitivity is 96.2%. The quantitative analysis of SMN2 copies in 375 patients with type I, type II, or type III SMA showed a significant correlation between SMN2 copy number and type of SMA as well as duration of survival. Thus, 80% of patients with type I SMA carry one or two SMN2 copies, and 82% of patients with type II SMA carry three SMN2 copies, whereas 96% of patients with type III SMA carry three or four SMN2 copies. Among 113 patients with type I SMA, 9 with one SMN2 copy lived <11 mo, 88/94 with two SMN2 copies lived <21 mo, and 8/10 with three SMN2 copies lived 33-66 mo. On the basis of SMN2 copy number, we calculated the posterior probability that a child with homozygous absence of SMN1 will develop type I, type II, or type III SMA.

Indexed as

Gene DosageHeterozygoteAdolescentAdultAgedAged, 80 and overAllelesBase SequenceChildChild, PreschoolCyclic AMP Response Element-Binding ProteinFemaleGenetic Predisposition to DiseaseGenetic TestingHaplotypesHumansCyclic AMP Response Element-Binding ProteinNerve Tissue ProteinsRNA-Binding ProteinsSMN1 protein, humanSMN2 protein, humanSMN Complex ProteinsSurvival of Motor Neuron 1 ProteinSurvival of Motor Neuron 2 Protein

Identifiers

PMID11791208
PMCPMC419987
OpenAlexW2094108169

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.