Evidence map›Paper›PMID 11791207›Full record

ArticleAmerican journal of human genetics2002

Mutations in a novel CLN6-encoded transmembrane protein cause variant neuronal ceroid lipofuscinosis in man and mouse.

Hanlin Gao, Rose-Mary N Boustany, Janice A Espinola, Susan L Cotman, Lakshmi Srinidhi, Kristen Auger Antonellis, Tammy Gillis, Xuebin Qin, Shumei Liu, Leah R Donahue and 6 more

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03285425 (Natural History Study of Batten's CLN6 Disease), which is not on this map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
6.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03285425 active not recruitingnot on this mapstarted 2017, after this paper: background citation

Natural History Study of Batten's CLN6 Disease

TypeobservationalSponsorEmily de los ReyesRan2017 to 2026Enrolled30ConditionsBatten Disease, CLN6ArmsNatural history
3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 223 citations in OpenAlex.

  1. Article
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  4. Review
  5. Review
  6. Article
  7. Exposure to SARS-CoV-2 and Infantile Diseases.Global medical genetics · 2023
    Article
  8. Review
  9. Article
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  12. Review
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  14. Article
  15. Review
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  17. Article
  18. Review
  19. Gene Therapy Corrects Brain and Behavioral Pathologies in CLN6-Batten Disease.Molecular therapy : the journal of the American Society of Gene Therapy · 2019
    Article
  20. Article

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 1 country.

Hanlin GaoMolecular Neurogenetics Unit, Massachusetts General Hospital, Charlestown, MA 02129, USA.
Rose-Mary N Boustany
Janice A Espinola
Susan L Cotman
Lakshmi Srinidhi
Kristen Auger Antonellis
Tammy Gillis
Xuebin Qin
Shumei Liu
Leah R Donahue
Roderick T Bronson
Jerry R Faust
Derek Stout
Jonathan L Haines
Terry J Lerner
Marcy E MacDonald
Massachusetts General Hospital · USTufts University · USJackson Laboratory · USDuke Medical Center · USVanderbilt University Medical Center · US

Funding

The Molecular Basis of NCLR01NS033648 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI MACDONALD, MARCY · 1995 to 2009
$2.5M
SUBUNIT-9 OF ATPSYNTHASE AND BATTEN DISEASER01NS030170 · NINDS · DUKE UNIVERSITY · PI BOUSTANY, ROSE-MARY N. · 1992 to 2001
$249k
NINDS NIH HHS NS30170NINDS NIH HHS NS33648NINDS NIH HHS R01 NS033648
6 · The paper itself

Abstract

The CLN6 gene that causes variant late-infantile neuronal ceroid lipofuscinosis (vLINCL), a recessively inherited neurodegenerative disease that features blindness, seizures, and cognitive decline, maps to 15q21-23. We have used multiallele markers spanning this approximately 4-Mb candidate interval to reveal a core haplotype, shared in Costa Rican families with vLINCL but not in a Venezuelan kindred, that highlighted a region likely to contain the CLN6 defect. Systematic comparison of genes from the minimal region uncovered a novel candidate, FLJ20561, that exhibited DNA sequence changes specific to the different disease chromosomes: a G-->T transversion in exon 3, introducing a stop codon on the Costa Rican haplotype, and a codon deletion in exon 5, eliminating a conserved tyrosine residue on the Venezuelan chromosome. Furthermore, sequencing of the murine homologue in the nclf mouse, which manifests recessive NCL-like disease, disclosed a third lesion-an extra base pair in exon 4, producing a frameshift truncation on the nclf chromosome. Thus, the novel approximately 36-kD CLN6-gene product augments an intriguing set of unrelated membrane-spanning proteins, whose deficiency causes NCL in mouse and man.

Indexed as

Amino Acid SequenceAnimalsBase SequenceChromosome MappingChromosomes, Human, Pair 15Costa RicaDNA Mutational AnalysisExonsFemaleGene DeletionGene FrequencyHaplotypesHumansMaleMembrane ProteinsMiceCLN6 protein, humanCln6 protein, mouseMembrane ProteinsRNA, Messenger

Identifiers

PMID11791207
PMCPMC384912
OpenAlexW2059092093

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.