Evidence map›Paper›PMID 11779813›Full record

ArticleGenetics2001

Arabidopsis genes essential for seedling viability: isolation of insertional mutants and molecular cloning.

G J Budziszewski, S P Lewis, L W Glover, J Reineke, G Jones, L S Ziemnik, J Lonowski, B Nyfeler, G Aux, Q Zhou and 7 more

Abstract read
In one paragraph

Article in Genetics, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 140 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
  5. Plant DNA Repair andInternational journal of molecular sciences · 2021
    Review
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  16. Roles and maturation of iron-sulfur proteins in plastids.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2018
    Review
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 1 country.

G J BudziszewskiSyngenta Biotechnology, Inc., Research Triangle Park, North Carolina 27709, USA.
S P Lewis
L W Glover
J Reineke
G Jones
L S Ziemnik
J Lonowski
B Nyfeler
G Aux
Q Zhou
J McElver
D A Patton
R Martienssen
U Grossniklaus
H Ma
M Law
J Z Levin
Syngenta (United States) · USCold Spring Harbor Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have undertaken a large-scale genetic screen to identify genes with a seedling-lethal mutant phenotype. From screening approximately 38,000 insertional mutant lines, we identified >500 seedling-lethal mutants, completed cosegregation analysis of the insertion and the lethal phenotype for >200 mutants, molecularly characterized 54 mutants, and provided a detailed description for 22 of them. Most of the seedling-lethal mutants seem to affect chloroplast function because they display altered pigmentation and affect genes encoding proteins predicted to have chloroplast localization. Although a high level of functional redundancy in Arabidopsis might be expected because 65% of genes are members of gene families, we found that 41% of the essential genes found in this study are members of Arabidopsis gene families. In addition, we isolated several interesting classes of mutants and genes. We found three mutants in the recently discovered nonmevalonate isoprenoid biosynthetic pathway and mutants disrupting genes similar to Tic40 and tatC, which are likely to be involved in chloroplast protein translocation. Finally, we directly compared T-DNA and Ac/Ds transposon mutagenesis methods in Arabidopsis on a genome scale. In each population, we found only about one-third of the insertion mutations cosegregated with a mutant phenotype.

Indexed as

Cloning, MolecularMutagenesis, InsertionalMutationArabidopsisCell SurvivalChloroplastsDNA Transposable ElementsModels, GeneticMultigene FamilyPhenotypePlasmidsPolymerase Chain ReactionSeedsDNA Transposable Elements

Identifiers

PMID11779813
PMCPMC1461917
OpenAlexW2101920100

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.