Evidence map›Paper›PMID 11779788›Full record

ArticleGenetics2001

Multiple regulators of Ty1 transposition in Saccharomyces cerevisiae have conserved roles in genome maintenance.

D T Scholes, M Banerjee, B Bowen, M J Curcio

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 160 papers.

0numbers the graph read from it
0cells of the map it votes in
160citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

160 citing papers in PubMed, 237 citations in OpenAlex.

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  13. Artificial optimization of bambooFrontiers in plant science · 2022
    Article
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  15. Review
  16. Article
  17. Genetic interaction between RLM1 and F-box motif encoding gene SAF1 contributes to stress response in Saccharomyces cerevisiae.Genes and environment : the official journal of the Japanese Environmental Mutagen Society · 2021
    Article
  18. Article
  19. Article
  20. Article

100 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

D T ScholesMolecular Genetics Program, Wadsworth Center and School of Public Health, State University of New York, Albany, New York 12201-2002, USA.
M Banerjee
B Bowen
M J Curcio
University at Albany, State University of New York · USWadsworth Center · US

Funding

REGULATION OF RETROTRANSPOSITION IN S. CEREVISIAER01GM052072 · NIGMS · WADSWORTH CENTER · PI CURCIO, M JOAN · 2000 to 2013
$3.3M
REGULATION OF RETROTRANSPOSITION IN S CEREVISIAER29GM052072 · NIGMS · WADSWORTH CENTER · PI CURCIO, M JOAN · 1995 to 1999
–
NIGMS NIH HHS GM52072NIGMS NIH HHS R01 GM052072
6 · The paper itself

Abstract

Most Ty1 retrotransposons in the genome of Saccharomyces cerevisiae are transpositionally competent but rarely transpose. We screened yeast mutagenized by insertion of the mTn3-lacZ/LEU2 transposon for mutations that result in elevated Ty1 cDNA-mediated mobility, which occurs by cDNA integration or recombination. Here, we describe the characterization of mTn3 insertions in 21 RTT (regulation of Ty1 transposition) genes that result in 5- to 111-fold increases in Ty1 mobility. These 21 RTT genes are EST2, RRM3, NUT2, RAD57, RRD2, RAD50, SGS1, TEL1, SAE2, MED1, MRE11, SCH9, KAP122, and 8 previously uncharacterized genes. Disruption of RTT genes did not significantly increase Ty1 RNA levels but did enhance Ty1 cDNA levels, suggesting that most RTT gene products act at a step after mRNA accumulation but before cDNA integration. The rtt mutations had widely varying effects on integration of Ty1 at preferred target sites. Mutations in RTT101 and NUT2 dramatically stimulated Ty1 integration upstream of tRNA genes. In contrast, a mutation in RRM3 increased Ty1 mobility >100-fold without increasing integration upstream of tRNA genes. The regulation of Ty1 transposition by components of fundamental pathways required for genome maintenance suggests that Ty1 and yeast have coevolved to link transpositional dormancy to the integrity of the genome.

Indexed as

GenomeBlotting, NorthernDNA, ComplementaryDNA DamageGenes, FungalModels, GeneticMutagenesisMutationPlasmidsRetroelementsRNASaccharomyces cerevisiaeTelomereTranscription, GeneticDNA, ComplementaryRetroelementsRNA

Identifiers

PMID11779788
PMCPMC1461915
OpenAlexW2101107183

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.