Evidence map›Paper›PMID 11773054›Full record

ArticleThe Journal of biological chemistry2002

Molecular basis of evolutionary loss of the alpha 1,3-galactosyltransferase gene in higher primates.

Chihiro Koike, John J Fung, David A Geller, Reiji Kannagi, Therese Libert, Patrizia Luppi, Izumi Nakashima, Jennifer Profozich, William Rudert, Sugandha B Sharma and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 83 citations in OpenAlex.

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  20. Carbohydrates as allergens.Current allergy and asthma reports · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Chihiro KoikeThomas E. Starzl Transplantation Institute and Department of Surgery, University of Pittsburgh, Pennsylvania 15213, USA. koikec@msx.upmc.edu
John J Fung
David A Geller
Reiji Kannagi
Therese Libert
Patrizia Luppi
Izumi Nakashima
Jennifer Profozich
William Rudert
Sugandha B Sharma
Thomas E Starzl
Massimo Trucco
University of Pittsburgh · USChildren's Hospital of Pittsburgh · USAichi Cancer Center · JPNagoya University · JPUniversity of Pittsburgh Medical Center · US

Funding

MODULATION OF CHIMERISM FOR INTESTINAL TRANSPLANTATIONR01DK054232 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MURASE, NORIKO · 1999 to 2003
$2.3M
INTERLEUKIN 6 AND HUMAN BILIARY EPITHELIAL PROLIFERATIONR01DK049615 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DEMETRIS, ANTHONY J · 1996 to 2006
$1.4M
ORTHOTOPIC LIVER TRANSPLANTATIONR01DK029961 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI STARZL, THOMAS E · 1986 to 2001
$876k
PATHOGENESIS AND TREATMENT OF CHRONIC REJECTIONR01AI038899 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MURASE, NORIKO · 1998 to 2002
$668k
COMBINED BONE MARROW AND ORGAN TRANSPLANTATION IN HUMANSR01AI040329 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FUNG, JOHN J · 1996 to 2000
$314k
ORTHOTOPIC LIVER TRANSPLANTATIONR37DK029961 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI STARZL, THOMAS E · 1988 to 1995
–
NIAID NIH HHS AI40329NIAID NIH HHS R01 AI/DK38899NIDDK NIH HHS DK29961NIDDK NIH HHS DK49615NIDDK NIH HHS R01 DK029961NIDDK NIH HHS R01 DK049615NIDDK NIH HHS R01 DK054232NIDDK NIH HHS R01 DK54232
6 · The paper itself

Abstract

Galactose-alpha1,3-galactose (alphaGal) epitopes, the synthesis of which requires the enzyme product of alpha1,3-galactosyltransferase (alpha1,3GT), are sugar chains on the cell surface of most mammalian species. Notable exceptions are higher primates including Old World monkeys, apes, and humans. The alphaGal-negative species as well as mice with deletion of the alpha1,3GT gene produce abundant anti-alphaGal antibodies. The evolutionary loss of alphaGal epitopes has been attributed to point mutations in the coding region of the gene. Because no transcripts could be found in the higher primate species with Northern blot analysis, a potential alternative explanation has been loss of upstream regulation of the gene. Here, we have demonstrated that the rhesus promoter is functional. More importantly, a variety of full-length transcripts were detected with sensitive PCR-based methods in the tissues of rhesus monkeys, orangutans, and humans. Five crucial mutations were delineated in the coding region of the human and rhesus and three in the orangutan, any one of which could be responsible for inactivation of the alpha1,3GT gene. Two of the mutations were shared by all three higher primates. These findings, which elucidate the molecular basis for the evolutionary loss of alphaGal expression, may have implications in medical research.

Indexed as

Evolution, MolecularGenomeAmino Acid SequenceAnimalsBase SequenceBlotting, NorthernCattleCercopithecidaeExonsGalactosyltransferasesGenome, HumanHumansLuciferasesMacaca mulattaMaleModels, GeneticGalactosyltransferasesLuciferasesN-acetyllactosaminide alpha-1,3-galactosyltransferaseRNA, Messenger

Identifiers

PMID11773054
PMCPMC3018882
OpenAlexW2114402065

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.