ArticleApplied and environmental microbiology2002
Comparative genomic analysis of archaeal genotypic variants in a single population and in two different oceanic provinces.
Article in Applied and environmental microbiology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
42 citing papers in PubMed, 171 citations in OpenAlex.
- Genome-enabled exploration of microbial ecology and evolution in the sea: a rising tide lifts all boats.Environmental microbiology · 2021Article
- Exploring Marine Planktonic Archaea: Then and Now.Frontiers in microbiology · 2020Article
- Inhibition of the growth of Bacillus subtilis DSM10 by a newly discovered antibacterial protein from the soil metagenome.Bioengineered · 2015Article
- Genomic and metabolic diversity of Marine Group I Thaumarchaeota in the mesopelagic of two subtropical gyres.PloS one · 2014Article
- Role for urea in nitrification by polar marine Archaea.Proceedings of the National Academy of Sciences of the United States of America · 2012Article
- A metagenomic assessment of winter and summer bacterioplankton from Antarctica Peninsula coastal surface waters.The ISME journal · 2012Article
- Ecological significance of microdiversity: coexistence among casing soil bacterial strains through allocation of nutritional resource.Indian journal of microbiology · 2011Article
- Novel lipolytic enzymes identified from metagenomic library of deep-sea sediment.Evidence-based complementary and alternative medicine : eCAM · 2011Article
- Marine genomics: at the interface of marine microbial ecology and biodiscovery.Microbial biotechnology · 2010Review
- Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea.Proceedings of the National Academy of Sciences of the United States of America · 2010Article
- A single-cell view on the ecophysiology of anaerobic phototrophic bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2008Article
- Metagenomics in animal gastrointestinal ecosystem: a microbiological and biotechnological perspective.Indian journal of microbiology · 2008Article
- Diversity and genomics of Antarctic marine micro-organisms.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2007Article
- Low genomic diversity in tropical oceanic N2-fixing cyanobacteria.Proceedings of the National Academy of Sciences of the United States of America · 2007Article
- Microbial community composition of the Danshui river estuary of Northern Taiwan and the practicality of the phylogenetic method in microbial barcoding.Microbial ecology · 2007Article
- Archaeal communities in a tropical estuarine ecosystem: Guanabara Bay, Brazil.Microbial ecology · 2007Article
- Structure and function of cold shock proteins in archaea.Journal of bacteriology · 2007Article
- Phylogenetic diversity of archaea and bacteria in the anoxic zone of a meromictic lake (Lake Pavin, France).Applied and environmental microbiology · 2007Article
- The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific.PLoS biology · 2007Article
- Biochemical characterisation of LigN, an NAD+-dependent DNA ligase from the halophilic euryarchaeon Haloferax volcanii that displays maximal in vitro activity at high salt concentrations.BMC molecular biology · 2006Article
Corrections and comments
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Authors and funding
10 authors at 5 institutions in 1 country.
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Abstract
Planktonic crenarchaeotes are present in high abundance in Antarctic winter surface waters, and they also make up a large proportion of total cell numbers throughout deep ocean waters. To better characterize these uncultivated marine crenarchaeotes, we analyzed large genome fragments from individuals recovered from a single Antarctic picoplankton population and compared them to those from a representative obtained from deeper waters of the temperate North Pacific. Sequencing and analysis of the entire DNA insert from one Antarctic marine archaeon (fosmid 74A4) revealed differences in genome structure and content between Antarctic surface water and temperate deepwater archaea. Analysis of the predicted gene products encoded by the 74A4 sequence and those derived from a temperate, deepwater planktonic crenarchaeote (fosmid 4B7) revealed many typical archaeal proteins but also several proteins that so far have not been detected in archaea. The unique fraction of marine archaeal genes included, among others, those for a predicted RNA-binding protein of the bacterial cold shock family and a eukaryote-type Zn finger protein. Comparison of closely related archaea originating from a single population revealed significant genomic divergence that was not evident from 16S rRNA sequence variation. The data suggest that considerable functional diversity may exist within single populations of coexisting microbial strains, even those with identical 16S rRNA sequences. Our results also demonstrate that genomic approaches can provide high-resolution information relevant to microbial population genetics, ecology, and evolution, even for microbes that have not yet been cultivated.
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