Evidence map›Paper›PMID 11763999›Full record

ArticleGene expression2001

SpSoxB1 serves an essential architectural function in the promoter SpAN, a tolloid/BMP1-related gene.

A P Kenny, L M Angerer, R C Angerer

Abstract read
In one paragraph

Article in Gene expression, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

A P KennyDepartment of Biology, University of Rochester, Rochester, NY 14627, USA.
L M Angerer
R C Angerer

Funding

University of Rochester Mentoring Environment: Nurturing Training Opportunities in Research (UR-MENTOR)T32GM007356 · NIGMS · UNIVERSITY OF ROCHESTER · PI O'BANION, M. KERRY · 1985 to 2023
$15.1M
IN SITU LOCALIZATION OF INFORMATIONAL EMBRYO RNASR01GM025553 · NIGMS · UNIVERSITY OF ROCHESTER · PI ANGERER, ROBERT C · 1985 to 2003
$1.6M
NIGMS NIH HHS GM25553NIGMS NIH HHS R01 GM025553NIGMS NIH HHS T32 GM007356NIGMS NIH HHS T32GM07356
6 · The paper itself

Abstract

Transcription of SpAN, which encodes a secreted protease related to tolloid and BMP 1, is differentially regulated along the animal-vegetal axis of the sea urchin embryo by a maternally initiated mechanism. Regulatory sites that bind SpSoxB1 and CBF (CCAAT binding factor) are essential for strong transcriptional activity because mutations of these elements reduce promoter activity in vivo 20- and 10-fold, respectively. Here we show that multimerized SpSoxB1 elements cannot activate transcription from the SpAN basal promoter in vivo. However, like other factors containing HMG-class DNA binding domains, SpSoxB1 does induce strong bending of DNA. The CBF binding site lies abnormally far from the transcriptional start site at -200 bp. We show that the SpSoxB1 site is not required if the CCAAT element is moved 100 bp closer to the transcriptional start site, replacing the SpSoxB1 site. This supports a model in which the bending of SpAN promoter DNA by SpSoxB1 facilitates interactions between factors binding to upstream and downstream regulatory elements.

Indexed as

Drosophila ProteinsPromoter Regions, GeneticAnimalsBase SequenceBone Morphogenetic Protein 1Bone Morphogenetic ProteinsDNA PrimersElectrophoretic Mobility Shift AssayInsect ProteinsMetalloendopeptidasesSea UrchinsSOXB1 Transcription FactorsTATA BoxTolloid-Like MetalloproteinasesTranscription FactorsBone Morphogenetic Protein 1Bone Morphogenetic ProteinsDNA PrimersDrosophila ProteinsInsect ProteinsMetalloendopeptidasesSoxB1 protein, Strongylocentrotus purpuratusSOXB1 Transcription FactorsSpAN protein, Strongylocentrotus purpuratustld protein, DrosophilaTolloid-Like MetalloproteinasesTranscription Factors

Identifiers

PMID11763999
PMCPMC5964949

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.