ArticleNucleic acids research2002
The Eukaryotic Promoter Database, EPD: new entry types and links to gene expression data.
Article in Nucleic acids research, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
43 citing papers in PubMed, 116 citations in OpenAlex.
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- ATR-mediated DNA damage responses underlie aberrant B cell activity in systemic lupus erythematosus.Science advances · 2022Article
- A novel sequence and context based method for promoter recognition.Bioinformation · 2014Article
- EPD and EPDnew, high-quality promoter resources in the next-generation sequencing era.Nucleic acids research · 2013Article
- Online tools for bioinformatics analyses in nutrition sciences.Advances in nutrition (Bethesda, Md.) · 2012Review
- Towards biological characters of interactions between transcription factors and their DNA targets in mammals.BMC genomics · 2012Article
- Estrogen-dependent gene expression in the mouse ovary.PloS one · 2011Article
- Promoters of two anther-specific genes confer organ-specific gene expression in a stage-specific manner in transgenic systems.Plant cell reports · 2007Article
- Recent computational approaches to understand gene regulation: mining gene regulation in silico.Current genomics · 2007Article
- MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data.Nucleic acids research · 2006Article
- EPD in its twentieth year: towards complete promoter coverage of selected model organisms.Nucleic acids research · 2006Article
- Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome.Genome research · 2006Article
- DBTSS: DataBase of Human Transcription Start Sites, progress report 2006.Nucleic acids research · 2006Article
- Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment.Genome biology · 2006Review
- Detection and preliminary analysis of motifs in promoters of anaerobically induced genes of different plant species.Annals of botany · 2005Article
- Osteo-Promoter Database (OPD) -- promoter analysis in skeletal cells.BMC genomics · 2005Article
- Mapping and functional characterization of the TAF11 interaction with TFIIA.Molecular and cellular biology · 2005Article
Corrections and comments
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Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The Eukaryotic Promoter Database (EPD) is an annotated, non-redundant collection of eukaryotic Pol II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes a description of the initiation site mapping data, exhaustive cross-references to the EMBL nucleotide sequence database, SWISS-PROT, TRANSFAC and other databases, as well as bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis. World Wide Web-based interfaces have been developed which enable the user to view EPD entries in different formats, to select and extract promoter sequences according to a variety of criteria, and to navigate to related databases exploiting different cross-references. The EPD web site also features yearly updated base frequency matrices for major eukaryotic promoter elements. EPD can be accessed at http://www.epd.isb-sib.ch.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.