ArticleNucleic acids research2002
SCOP database in 2002: refinements accommodate structural genomics.
Article in Nucleic acids research, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 147 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
147 citing papers in PubMed.
- Genome sequencing and de novo and reference-based genome assemblies of Bos indicus breeds.Genes & genomics · 2023Article
- SCOPe: improvements to the structural classification of proteins - extended database to facilitate variant interpretation and machine learning.Nucleic acids research · 2022Article
- SCOPe: classification of large macromolecular structures in the structural classification of proteins-extended database.Nucleic acids research · 2019Article
- From malaria to cancer: Computational drug repositioning of amodiaquine using PLIP interaction patterns.Scientific reports · 2017Article
- SCOPe: Manual Curation and Artifact Removal in the Structural Classification of Proteins - extended Database.Journal of molecular biology · 2017Article
- Structure of the 40S ribosomal subunit ofActa pharmaceutica Sinica. B · 2017Article
- Metabolic Pathway Assignment of Plant Genes based on Phylogenetic Profiling-A Feasibility Study.Frontiers in plant science · 2017Article
- Three-Dimensional Biologically Relevant Spectrum (BRS-3D): Shape Similarity Profile Based on PDB Ligands as Molecular Descriptors.Molecules (Basel, Switzerland) · 2016Article
- The value of protein structure classification information-Surveying the scientific literature.Proteins · 2015Article
- Customised fragments libraries for protein structure prediction based on structural class annotations.BMC bioinformatics · 2015Article
- Rapid search for tertiary fragments reveals protein sequence-structure relationships.Protein science : a publication of the Protein Society · 2015Article
- SCOPe: Structural Classification of Proteins--extended, integrating SCOP and ASTRAL data and classification of new structures.Nucleic acids research · 2014Article
- SCOP2 prototype: a new approach to protein structure mining.Nucleic acids research · 2014Article
- The effect of edge definition of complex networks on protein structure identification.Computational and mathematical methods in medicine · 2013Article
- Molecular modeling comparison of the performance of NS5b polymerase inhibitor (PSI-7977) on prevalent HCV genotypes.The protein journal · 2013Article
- Protein similarity networks reveal relationships among sequence, structure, and function within the Cupin superfamily.PloS one · 2013Article
- Efficient protein structure search using indexing methods.BMC medical informatics and decision making · 2013Article
- Genomic and functional characterization of the diverse immunoglobulin domain-containing protein (DICP) family.Genomics · 2012Article
- A global comparison of the human and T. brucei degradomes gives insights about possible parasite drug targets.PLoS neglected tropical diseases · 2012Article
- Cofactor mobility determines reaction outcome in the IMPDH and GMPR (β-α)8 barrel enzymes.Nature chemical biology · 2011Article
87 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The SCOP (Structural Classification of Proteins) database is a comprehensive ordering of all proteins of known structure, according to their evolutionary and structural relationships. Protein domains in SCOP are grouped into species and hierarchically classified into families, superfamilies, folds and classes. Recently, we introduced a new set of features with the aim of standardizing access to the database, and providing a solid basis to manage the increasing number of experimental structures expected from structural genomics projects. These features include: a new set of identifiers, which uniquely identify each entry in the hierarchy; a compact representation of protein domain classification; a new set of parseable files, which fully describe all domains in SCOP and the hierarchy itself. These new features are reflected in the ASTRAL compendium. The SCOP search engine has also been updated, and a set of links to external resources added at the level of domain entries. SCOP can be accessed at http://scop.mrc-lmb.cam.ac.uk/scop.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.