Evidence map›Paper›PMID 11752280›Full record

ArticleNucleic acids research2002

JSNP: a database of common gene variations in the Japanese population.

Mika Hirakawa, Toshihiro Tanaka, Yoichi Hashimoto, Masako Kuroda, Toshihisa Takagi, Yusuke Nakamura

Abstract read
In one paragraph

Article in Nucleic acids research, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Angiotensin II type 1 receptor polymorphisms and susceptibility to hypertension: a HuGE review.Genetics in medicine : official journal of the American College of Medical Genetics · 2008
    Pooled it
  2. Trial
  3. Trial
  4. Polycystic Ovarian Syndrome: A Review of Multi-omics Analyses.Reproductive sciences (Thousand Oaks, Calif.) · 2025
    Review
  5. Article
  6. Genetic variations in medical research in the past, at present and in the future.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2021
    Review
  7. Review
  8. Article
  9. Article
  10. PeerJ · 2017
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. How to build personalized multi-omics comorbidity profiles.Frontiers in cell and developmental biology · 2015
    Article
  17. Simple generation of albino C57BL/6J mice with G291T mutation in the tyrosinase gene by the CRISPR/Cas9 system.Mammalian genome : official journal of the International Mammalian Genome Society · 2014
    Article
  18. Mucin 1 gene (MUC1) and gastric-cancer susceptibility.International journal of molecular sciences · 2014
    Article
  19. Article
  20. Article

20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Mika HirakawaBioinformatics Division, Japan Science and Technology Corporation (JST), 5-3 Yonban-cho, Chiyoda-ku, Tokyo 102-0081, Japan.
Toshihiro Tanaka
Yoichi Hashimoto
Masako Kuroda
Toshihisa Takagi
Yusuke Nakamura

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

JSNP is a repository of Japanese Single Nucleotide Polymorphism (SNP) data, begun in 2000 and developed through the Prime Minister's Millennium Project. The aim of this undertaking is to identify and collate up to 150 000 SNPs from the Japanese population, located in genes or in adjacent regions that might influence the coding sequence of the genes. The project has been carried out by a collaboration between the Human Genome Center (HGC) in the Institute of Medical Science (IMS) at the University of Tokyo and the Japan Science and Technology Corporation (JST). JSNP serves as both a storage site for the Japanese SNPs obtained from the ongoing project and as a facility for public dissemination to allow researchers access to high quality SNP data. A primary motivation of the project is the construction of a basic data set to identify relationships between polymorphisms and common diseases or the reaction to drugs. As such, emphasis has been placed on the identification of SNPs that lie in candidate regions which may affect phenotype but which would not necessarily directly cause disease. Unrestricted access to JSNP and any associated files is available at http://snp.ims.u-tokyo.ac.jp/.

Indexed as

Databases, GeneticPolymorphism, Single NucleotideChromosomes, HumanComputer GraphicsDatabase Management SystemsDrug-Related Side Effects and Adverse ReactionsForecastingGenetic Diseases, InbornGenetic VariationHumansInformation Storage and RetrievalInternetJapan

Identifiers

PMID11752280
PMCPMC99126

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.