ArticleNucleic acids research2002
MagnaportheDB: a federated solution for integrating physical and genetic map data with BAC end derived sequences for the rice blast fungus Magnaporthe grisea.
Article in Nucleic acids research, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
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Who cites it
9 citing papers in PubMed.
- A BAC based physical map and genome survey of the rice false smut fungus Villosiclava virens.BMC genomics · 2013Article
- Identification and fine mapping of AvrPi15, a novel avirulence gene of Magnaporthe grisea.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2006Article
- SPODOBASE: an EST database for the lepidopteran crop pest Spodoptera.BMC bioinformatics · 2006Article
- The role of transposable element clusters in genome evolution and loss of synteny in the rice blast fungus Magnaporthe oryzae.Genome biology · 2006Article
- TropGENE-DB, a multi-tropical crop information system.Nucleic acids research · 2004Article
- Gene expression analysis of plant host-pathogen interactions by SuperSAGE.Proceedings of the National Academy of Sciences of the United States of America · 2003Article
- Serial Analysis of Gene Expression (SAGE) of Magnaporthe grisea: genes involved in appressorium formation.Molecular genetics and genomics : MGG · 2003Article
- The rice blast pathosystem as a case study for the development of new tools and raw materials for genome analysis of fungal plant pathogens.The New phytologist · 2003Review
- Generalized gap model for bacterial artificial chromosome clone fingerprint mapping and shotgun sequencing.Genome research · 2002Article
Corrections and comments
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Authors and funding
10 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We have created a federated database for genome studies of Magnaporthe grisea, the causal agent of rice blast disease, by integrating end sequence data from BAC clones, genetic marker data and BAC contig assembly data. A library of 9216 BAC clones providing >25-fold coverage of the entire genome was end sequenced and fingerprinted by HindIII digestion. The Image/FPC software package was then used to generate an assembly of 188 contigs covering >95% of the genome. The database contains the results of this assembly integrated with hybridization data of genetic markers to the BAC library. AceDB was used for the core database engine and a MySQL relational database, populated with numerical representations of BAC clones within FPC contigs, was used to create appropriately scaled images. The database is being used to facilitate sequencing efforts. The database also allows researchers mapping known genes or other sequences of interest, rapid and easy access to the fundamental organization of the M.grisea genome. This database, MagnaportheDB, can be accessed on the web at http://www.cals.ncsu.edu/fungal_genomics/mgdatabase/int.htm.
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