Evidence map›Paper›PMID 11751333›Full record

ArticleBiophysical journal2002

Dynamics of antifreeze glycoproteins in the presence of ice.

Nelly M Tsvetkova, Brian L Phillips, Viswanathan V Krishnan, Robert E Feeney, William H Fink, John H Crowe, Subhash H Risbud, Fern Tablin, Yin Yeh

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Bacterial lipoteichoic acid enhances cryosurvival.Extremophiles : life under extreme conditions · 2015
    Article
  5. Article
  6. Article
  7. Article
  8. Protein-ice interaction of an antifreeze protein observed with solid-state NMR.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Nelly M TsvetkovaSection of Molecular and Cellular Biology, University of California, Davis, California 95616, USA. nmsvetkova@ucdavis.edu
Brian L Phillips
Viswanathan V Krishnan
Robert E Feeney
William H Fink
John H Crowe
Subhash H Risbud
Fern Tablin
Yin Yeh
University of California, Davis · USCalifornia Department of Food and Agriculture · USLawrence Livermore National Laboratory · US

Funding

LIPID PHASE TRANSITIONS AND PLATELET ACTIVATIONR01HL057810 · NHLBI · UNIVERSITY OF CALIFORNIA DAVIS · PI TABLIN, FERN · 1997 to 2001
$485k
AFGPS AND PLATELET MEMBRANE STABILIZATIONR01HL061204 · NHLBI · UNIVERSITY OF CALIFORNIA DAVIS · PI TABLIN, FERN · 1998 to 2001
$394k
NHLBI NIH HHS HL61204NHLBI NIH HHS R01HL57810-01
6 · The paper itself

Abstract

Antifreeze glycoproteins from the Greenland cod Boreogadus saida were dimethylated at the N-terminus (m*AFGP) and their dynamics and conformational properties were studied in the presence of ice using (13)C-NMR and FTIR spectroscopy. (13)C-NMR experiments of m*AFGP in D(2)O, in H(2)O, and of freeze-dried m*AFGP were performed as a function of temperature. Dynamic parameters ((1)H T(1 rho) and T(CH)) obtained by varying the contact time revealed notable differences in the motional properties of AFGP between the different states. AFGP/ice dynamics was dominated by fast-scale motions (nanosecond to picosecond time scale), suggesting that the relaxation is markedly affected by the protein hydration. The data suggest that AFGP adopts a similar type of three-dimensional fold both in the presence of ice and in the freeze-dried state. FTIR studies of the amide I band did not show a single prevailing secondary structure in the frozen state. The high number of conformers suggests a high flexibility, and possibly reflects the necessity to expose more ice-binding groups. The data suggest that the effect of hydration on the local mobility of AFGP and the lack of significant change in the backbone conformation in the frozen state may play a role in inhibiting the ice crystal growth.

Indexed as

IceAnimalsAntifreeze ProteinsFishesMagnetic Resonance SpectroscopyPressureProtein ConformationSpectroscopy, Fourier Transform InfraredAntifreeze ProteinsIce

Identifiers

PMID11751333
PMCPMC1302486
OpenAlexW1997244283

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.