Evidence map›Paper›PMID 11751319›Full record

ArticleBiophysical journal2002

Role of the DNase-I-binding loop in dynamic properties of actin filament.

Sofia Yu Khaitlina, Hanna Strzelecka-Gołaszewska

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.9field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 49 citations in OpenAlex.

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  10. Review
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  12. Structural polymorphism in F-actin.Nature structural & molecular biology · 2010
    Article
  13. Article
  14. Modulation of actin structure and function by phosphorylation of Tyr-53 and profilin binding.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
  15. Phosphorylation of actin Tyr-53 inhibits filament nucleation and elongation and destabilizes filaments.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Article
  16. The crystal structure of a cross-linked actin dimer suggests a detailed molecular interface in F-actin.Proceedings of the National Academy of Sciences of the United States of America · 2005
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 2 countries.

Sofia Yu KhaitlinaDepartment of Cell Culture, Institute of Cytology, 194064 St. Petersburg, Russia.
Hanna Strzelecka-Gołaszewska
Institute of Cytology · RUInstytut Biologii Doświadczalnej im. Marcelego Nenckiego · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Effects of proteolytic modifications of the DNase-I-binding loop (residues 39-51) in subdomain 2 of actin on F-actin dynamics were investigated by measuring the rates of the polymer subunit exchange with the monomer pool at steady state and of ATP hydrolysis associated with it, and by determination of relative rate constants for monomer addition to and dissociation from the polymer ends. Cleavage of actin between Gly-42 and Val-43 by protease ECP32 resulted in enhancement of the turnover rate of polymer subunits by an order of magnitude or more, in contrast to less than a threefold increase produced by subtilisin cleavage between Met-47 and Gly-48. Probing the structure of the modified actins by limited digestion with trypsin revealed a correlation between the increased F-actin dynamics and a change in the conformation of subdomain 2, indicating a more open state of the filament subunits relative to intact F-actin. The cleavage with trypsin and steady-state ATPase were cooperatively inhibited by phalloidin, with half-maximal effects at phalloidin to actin molar ratio of 1:8 and full inhibition at a 1:1 ratio. The results support F-actin models in which only the N-terminal segment of loop 39-51 is involved in monomer-monomer contacts, and suggest a possibility of regulation of actin dynamics in the cell through allosteric effects on this segment of the actin polypeptide chain.

Indexed as

ActinsAdenosine TriphosphateAnimalsBinding SitesDeoxyribonuclease IKineticsLightMicroscopy, ElectronMuscle, SkeletalPeptide FragmentsPeptide MappingProtein BindingProtein Structure, SecondaryProtein SubunitsRabbitsScattering, RadiationActinsAdenosine TriphosphateDeoxyribonuclease IPeptide FragmentsProtein SubunitsTrypsin

Identifiers

PMID11751319
PMCPMC1302472
OpenAlexW2055679517

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.