ArticleGenome research2001
Toward a cytological characterization of the rice genome.
Article in Genome research, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 92 papers.
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Who cites it
92 citing papers in PubMed, 210 citations in OpenAlex.
- Comparative Oligo-FISH Mapping Illuminates Chromosomal Evolution Among Rutaceae Species Diverged Over 50 Million Years.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026Article
- Genetic diversity and evolution of rice centromeres.Nature genetics · 2025Article
- Cyto-molecular characterization of rDNA and chromatin composition in the NOR-associated satellite in Chestnut (Castanea spp.).Scientific reports · 2024Article
- Miniature-inverted-repeat transposable elements contribute to phenotypic variation regulation of rice induced by space environment.Frontiers in plant science · 2024Article
- Activation characteristics of Ty3-retrotransposons after spaceflight and genetic stability of insertion sites in rice progeny.Frontiers in plant science · 2024Article
- Karyotyping of aneuploid and polyploid plants from low coverage whole-genome resequencing.BMC plant biology · 2023Article
- Oligo-FISH ofInternational journal of molecular sciences · 2023Article
- Genome-Wide Effects on Gene Expression Between Parental and Filial Generations of Trisomy 11 and 12 of Rice.Rice (New York, N.Y.) · 2023Article
- Article
- Reconstruction of karyotypic evolution in Saccharum spontaneum species by comparative oligo-FISH mapping.BMC plant biology · 2022Article
- Methylation in the CHH Context Allows to Predict Recombination in Rice.International journal of molecular sciences · 2022Article
- A high-density linkage map of finger millet provides QTL for blast resistance and other agronomic traits.The plant genome · 2022Article
- A Genome Doubling Event Reshapes Rice Morphology and Products by Modulating Chromatin Signatures and Gene Expression Profiling.Rice (New York, N.Y.) · 2021Article
- Karyotype diversity in cultivated and wild Indian rice through EMA-based chromosome analysis.Journal of genetics · 2021Article
- Identification of passion fruit (Passiflora edulis) chromosomes using BAC-FISH.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2019Article
- Engineering meiotic recombination pathways in rice.Plant biotechnology journal · 2019Review
- The large genome size variation in the Hesperis clade was shaped by the prevalent proliferation of DNA repeats and rarer genome downsizing.Annals of botany · 2019Article
- Chromosome painting and comparative physical mapping of the sex chromosomes in Populus tomentosa and Populus deltoides.Chromosoma · 2018Article
- Chromosome painting and its applications in cultivated and wild rice.BMC plant biology · 2018Article
- Comparative Oligo-FISH Mapping: An Efficient and Powerful Methodology To Reveal Karyotypic and Chromosomal Evolution.Genetics · 2018Article
32 more citing papers are in PubMed but not listed here.
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Authors and funding
5 authors at 1 institution in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Rice (Oryza sativa L.) will be the first major crop, as well as the first monocot plant species, to be completely sequenced. Integration of DNA sequence-based maps with cytological maps will be essential to fully characterize the rice genome. We have isolated a set of 24 chromosomal arm-specific bacterial artificial chromosomes to facilitate rice chromosome identification. A standardized rice karyotype was constructed using meiotic pachytene chromosomes of O. sativa spp. japonica rice var. Nipponbare. This karyotype is anchored by centromere-specific and chromosomal arm-specific cytological landmarks and is fully integrated with the most saturated rice genetic linkage maps in which Nipponbare was used as one of the mapping parents. An ideogram depicting the distribution of heterochromatin in the rice genome was developed based on the patterns of 4',6-diamidino-2-phenylindole staining of the Nipponbare pachytene chromosomes. The majority of the heterochromatin is distributed in the pericentric regions with some rice chromosomes containing a significantly higher proportion of heterochromatin than other chromosomes. We showed that pachytene chromosome-based fluorescence in situ hybridization analysis is the most effective approach to integrate DNA sequences with euchromatic and heterochromatic features.
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