ArticleGenome research2001
The LN54 radiation hybrid map of zebrafish expressed sequences.
Article in Genome research, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
16 citing papers in PubMed, 70 citations in OpenAlex.
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- Mutations in gfpt1 and skiv2l2 cause distinct stage-specific defects in larval melanocyte regeneration in zebrafish.PLoS genetics · 2007Article
- Evolution of pigment synthesis pathways by gene and genome duplication in fish.BMC evolutionary biology · 2007Article
- A major zebrafish polymorphism resource for genetic mapping.Genome biology · 2007Article
- Comparative genomics provides evidence for close evolutionary relationships between the urotensin II and somatostatin gene families.Proceedings of the National Academy of Sciences of the United States of America · 2006Article
- Olfactory expression of a single and highly variable V1r pheromone receptor-like gene in fish species.Proceedings of the National Academy of Sciences of the United States of America · 2005Article
- A zebrafish model for pyruvate dehydrogenase deficiency: rescue of neurological dysfunction and embryonic lethality using a ketogenic diet.Proceedings of the National Academy of Sciences of the United States of America · 2004Article
- Comparative analysis of the testis and ovary transcriptomes in zebrafish by combining experimental and computational tools.Comparative and functional genomics · 2004Article
- Functional divergence of two zebrafish midkine growth factors following fish-specific gene duplication.Genome research · 2003Article
- Article
- Rapid mapping of zebrafish mutations with SNPs and oligonucleotide microarrays.Genome research · 2002Article
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Authors and funding
20 authors at 1 institution in 4 countries.
Funding
Abstract
To increase the density of a gene map of the zebrafish, Danio rerio, we have placed 3119 expressed sequence tags (ESTs) and cDNA sequences on the LN54 radiation hybrid (RH) panel. The ESTs and genes mapped here join 748 SSLp markers and 459 previously mapped genes and ESTs, bringing the total number of markers on the LN54 RH panel to 4226. Addition of these new markers brings the total LN54 map size to 14,372 cR, with 118 kb/cR. The distribution of ESTs according to linkage groups shows relatively little variation (minimum, 73; maximum, 201). This observation, combined with a relatively uniform size for zebrafish chromosomes, as previously indicated by karyotyping, indicates that there are no especially gene-rich or gene-poor chromosomes in this species. We developed an algorithm to provide a semiautomatic method for the selection of additional framework markers for the LN54 map. This algorithm increased the total number of framework markers to 1150 and permitted the mapping of a high percentage of sequences that could not be placed on a previous version of the LN54 map. The increased concentration of expressed sequences on the LN54 map of the zebrafish genome will facilitate the molecular characterization of mutations in this species.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.