Evidence map›Paper›PMID 11726692›Full record

ArticleNucleic acids research2001

Restriction enzymes increase efficiencies of illegitimate DNA integration but decrease homologous integration in mammalian cells.

P Manivasakam, J Aubrecht, S Sidhom, R H Schiestl

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 23 citations in OpenAlex.

  1. Assembling nuclear domains: Lessons from DNA repair.The Journal of cell biology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

P ManivasakamDepartment of Cancer Cell Biology, Harvard School of Public Health, 665 Huntington Avenue, Boston, MA 02115, USA.
J Aubrecht
S Sidhom
R H Schiestl
Harvard University · US

Funding

NIEHS NIH HHS ES00299
6 · The paper itself

Abstract

Mammalian cells repair DNA double-strand breaks by illegitimate end-joining or by homologous recombination. We investigated the effects of restriction enzymes on illegitimate and homologous DNA integration in mammalian cells. A plasmid containing the neo(R) expression cassette, which confers G418 resistance, was used to select for illegitimate integration events in CHO wild-type and xrcc5 mutant cells. Co-transfection with the restriction enzymes BamHI, BglII, EcoRI and KpnI increased the efficiency of linearized plasmid integration up to 5-fold in CHO cells. In contrast, the restriction enzymes did not increase the integration efficiency in xrcc5 mutant cells. Effects of restriction enzymes on illegitimate and homologous integration were also studied in mouse embryonic stem (ES) cells using a plasmid containing the neo(R) gene flanked by exon 3 of HPRT: The enzymes BamHI, BglII and EcoRI increased the illegitimate integration efficiency of transforming DNA several-fold, similar to the results for CHO cells. However, all three enzymes decreased the absolute frequency of homologous integration approximately 2-fold, and the percentage of homologous integration decreased >10-fold. This suggests that random DNA breaks attract illegitimate recombination (IR) events that compete with homology search.

Indexed as

Antigens, NuclearBacterial ProteinsDNA HelicasesDNA RepairAnimalsCHO CellsCricetinaeDeoxyribonuclease BamHIDeoxyribonuclease EcoRIDeoxyribonucleases, Type II Site-SpecificDNA-Binding ProteinsDNA Restriction EnzymesGene TargetingKu AutoantigenModels, GeneticNuclear ProteinsAntigens, NuclearBacterial ProteinsBglII endonucleaseDeoxyribonuclease BamHIDeoxyribonuclease EcoRIDeoxyribonucleases, Type II Site-SpecificDNA-Binding ProteinsDNA HelicasesDNA Restriction EnzymesGGTACC-specific type II deoxyribonucleasesKu AutoantigenNuclear ProteinsXRCC5 protein, humanXrcc5 protein, mouseXrcc6 protein, humanXrcc6 protein, mouse

Identifiers

PMID11726692
PMCPMC96699
OpenAlexW2137017491

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.