Evidence map›Paper›PMID 11726508›Full record

ArticleThe EMBO journal2001

Evidence for a novel GTPase priming step in the SRP protein targeting pathway.

Y Lu, H Y Qi, J B Hyndman, N D Ulbrandt, A Teplyakov, N Tomasevic, H D Bernstein

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 41 citations in OpenAlex.

  1. Multiple conformational switches in a GTPase complex control co-translational protein targeting.Proceedings of the National Academy of Sciences of the United States of America · 2009
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  3. The crystal structure of the third signal-recognition particle GTPase FlhF reveals a homodimer with bound GTP.Proceedings of the National Academy of Sciences of the United States of America · 2007
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  13. Crystal structure of the complete core of archaeal signal recognition particle and implications for interdomain communication.Proceedings of the National Academy of Sciences of the United States of America · 2003
    Article
  14. Crystallization of the GMPPCP complex of the NG domains of Thermus aquaticus Ffh and FtsY.Acta crystallographica. Section D, Biological crystallography · 2003
    Article
  15. Article
  16. Induced nucleotide specificity in a GTPase.Proceedings of the National Academy of Sciences of the United States of America · 2003
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Y LuGenetics and Biochemistry Branch, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Building 10, Room 9D-20, Bethesda, MD 20892-1810, USA.
H Y Qi
J B Hyndman
N D Ulbrandt
A Teplyakov
N Tomasevic
H D Bernstein
National Institute of Diabetes and Digestive and Kidney Diseases · US

Funding

PROTEIN ENTRY INTO THE SECRETORY PATHWAYZ01DK052022 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI BERNSTEIN, HARRIS D · 1993 to 2008
$488k
Protein Entry Into The Secretory PathwayZIADK052022 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI BERNSTEIN, HARRIS · 2009 to 2009
$233k
6 · The paper itself

Abstract

Protein targeting by the signal recognition particle (SRP) pathway requires the interaction of two homologous GTPases that reciprocally regulate each other's GTPase activity, the SRP signal peptide- binding subunit (SRP54) and the SRP receptor alpha-subunit (SRalpha). The GTPase domain of both proteins abuts a unique 'N domain' that appears to facilitate external ligand binding. To examine the relationship between the unusual regulation and unique architecture of the SRP pathway GTPases, we mutated an invariant glycine in Escherichia coli SRP54 and SRalpha orthologs ('Ffh' and 'FtsY', respectively) that resides at the N-GTPase domain interface. A G257A mutation in Ffh produced a lethal phenotype. The mutation did not significantly affect Ffh function, but severely reduced interaction with FtsY. Likewise, mutation of FtsY Gly455 produced growth defects and inhibited interaction with Ffh. The data suggest that Ffh and FtsY interact only in a 'primed' conformation which requires interdomain communication. Based on these results, we propose that the distinctive features of the SRP pathway GTPases evolved to ensure that SRP and the SR engage external ligands before interacting with each other.

Indexed as

AllelesBacterial ProteinsBlotting, WesternDose-Response Relationship, DrugElectrophoresis, Polyacrylamide GelEscherichia coliEscherichia coli ProteinsGlutathione TransferaseGlycineGTP PhosphohydrolasesGuanosine TriphosphateLigandsModels, BiologicalModels, MolecularMutationPhenotypeBacterial ProteinsEscherichia coli ProteinsFfh protein, E coliFtsY protein, BacteriaGlutathione TransferaseGlycineGTP PhosphohydrolasesGuanosine TriphosphateLigandsReceptors, Cytoplasmic and NuclearRecombinant Fusion ProteinsSignal Recognition Particle

Identifiers

PMID11726508
PMCPMC125757
OpenAlexW2058504802

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.