Evidence map›Paper›PMID 11724865›Full record

ArticleJournal of clinical microbiology2001

Rapid identification of Mycobacteria to the species level using INNO-LiPA Mycobacteria, a reverse hybridization assay.

P N Suffys, A da Silva Rocha, M de Oliveira, C E Campos, A M Barreto, F Portaels, L Rigouts, G Wouters, G Jannes, G van Reybroeck and 2 more

Abstract readComparative StudyEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Guideline
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Comparative Genomic and Transcriptomic Analyses ofFrontiers in cellular and infection microbiology · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Evaluation of INNO-LiPA mycobacteria v2 assay for identification of rapidly growing mycobacteria.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2011
    Article
  12. Article
  13. Article
  14. Article
  15. Recent advances in diagnostic microbiology.Seminars in hematology · 2009
    Review
  16. Article
  17. Article
  18. Article
  19. Mycobacterium avium in the postgenomic era.Clinical microbiology reviews · 2007
    Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

P N SuffysBiochemistry and Molecular Biology Department, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, Rio de Janeiro, Brazil. psuffys@ioc.fiocruz.br
A da Silva Rocha
M de Oliveira
C E Campos
A M Barreto
F Portaels
L Rigouts
G Wouters
G Jannes
G van Reybroeck
W Mijs
B Vanderborght

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

INNO-LiPA Mycobacteria (LiPA; Innogenetics, Zwijnaarde, Belgium) is a kit for the simultaneous detection and identification of Mycobacterium species in culture and identifies the Mycobacterium tuberculosis complex, the M. avium complex (MAC), and the following Mycobacterium species: M. kansasii, M. avium, M. intracellulare, M. scrofulaceum, M. gordonae, M. xenopi, and the M. chelonae-M. abscessus complex. The assay, which targets the 16S-23S rRNA spacer region, was evaluated on 157 mycobacterial strains that had been identified by conventional techniques and PCR-restriction enzyme analysis of the hsp65 gene (PRA). Forty-seven reference strains consisting of 37 different species and 110 human clinical isolates were submitted to the test, and all were hybridized with the Mycobacterium genus probe (MYC) on the LiPA strip (100% sensitivity). Ninety-four isolates hybridized to their corresponding species- or complex-specific probes; only one isolate phenotypically identified as M. gordonae did not react with its specific probe (99.4% accuracy). Thirty-seven MAC strains were phenotypically identified to the complex level and to the species level by LiPA as M. avium (n = 18) or M. intracellulare (n = 7) or as belonging to the M. avium-M. intracellulare-M. scrofulaceum complex (n = 12). Of the last 12 strains, 10 had M. avium PRA patterns and 2 had M. intracellulare PRA patterns. Three isolates that had been identified as a single species by conventional identification were proven to be mixed cultures by the LiPA assay. The whole procedure can be performed in 1 working day, starting with the supernatant of a small amount of bacterial mass that had been treated by freezing and then boiling.

Indexed as

Bacterial ProteinsReagent Kits, DiagnosticChaperonin 60ChaperoninsDNA ProbesDNA, Ribosomal SpacerHumansMycobacteriumMycobacterium InfectionsNucleic Acid HybridizationPolymerase Chain ReactionPolymorphism, Restriction Fragment LengthReference StandardsReproducibility of ResultsRNA, Ribosomal, 16SRNA, Ribosomal, 23SBacterial ProteinsChaperonin 60ChaperoninsDNA ProbesDNA, Ribosomal Spacerheat-shock protein 65, MycobacteriumReagent Kits, DiagnosticRNA, Ribosomal, 16SRNA, Ribosomal, 23S

Identifiers

PMID11724865
PMCPMC88569

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.