Evidence map›Paper›PMID 11713292›Full record

ArticleMolecular and cellular biology2001

Identification and characterization of thymus LIM protein: targeted disruption reduces thymus cellularity.

J Kirchner, K A Forbush, M J Bevan

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Genetic and functional evidence implicates amedRxiv : the preprint server for health sciences · 2025
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  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

J KirchnerHoward Hughes Medical Institute and Department of Immunology, University of Washington, Seattle, WA 98195, USA.
K A Forbush
M J Bevan
Howard Hughes Medical Institute · US

Funding

CYTOTOXIC RESPONSE TO HISTOCOMPATIBILITY ANTIGENSR01AI019335 · NIAID · UNIVERSITY OF WASHINGTON · PI BEVAN, MICHAEL J · 1985 to 2012
$4.4M
CYTOTOXIC RESPONSE TO HISTOCOMPATIBILITY ANTIGENSR37AI019335 · NIAID · UNIVERSITY OF WASHINGTON · PI BEVAN, MICHAEL J · 1988 to 1997
–
NIAID NIH HHS AI 19335NIAID NIH HHS R01 AI019335
6 · The paper itself

Abstract

We have identified a novel LIM gene encoding the thymus LIM protein (TLP), expressed specifically in the thymus in a subset of cortical epithelial cells. TLP was identified as a gene product which is upregulated in a thymus in which selection of T cells is occurring (Rag(-/-) OT-1) compared to its expression in a thymus in which selection is blocked at the CD4+ CD8+ stage of T-cell development (Rag(-/-) Tap(-/-) OT-1). TLP has an apparent molecular mass of 23 kDa and exists as two isomers (TLP-A and TLP-B), which are generated by alternative splicing of the message. The sequences of TLP-A and TLP-B are identical except for the C-terminal 19 or 20 amino acids. Based on protein sequence alignment, TLP is most closely related to the cysteine-rich proteins, a subclass of the family of LIM-only proteins. In both medullary and cortical thymic epithelial cell lines transduced with TLP, the protein localizes to the cytoplasm but does not appear to be strongly associated with actin. In immunohistochemical studies, TLP seems to be localized in a subset of epithelial cells in the cortex and is most abundant near the corticomedullary junction. We generated mice with a targeted disruption of the Tlp locus. In the absence of TLP, thymocyte development and thymus architecture appear to be normal but thymocyte cellularity is reduced by approximately 30%, with a proportional reduction in each subpopulation.

Indexed as

ActinsAmino Acid SequenceAnimalsBlotting, NorthernCD4 AntigensCD8 AntigensCell NucleusCloning, MolecularCytoplasmDNADNA, ComplementaryFlow CytometryGlutathione TransferaseHomeodomain ProteinsImmunoblottingImmunohistochemistryActinsCD4 AntigensCD8 AntigensCrip3 protein, mouseDNADNA, ComplementaryGlutathione TransferaseHomeodomain ProteinsLIM Domain ProteinsLimk1 protein, mouseLim KinasesProtein KinasesRecombinant Fusion ProteinsRNA

Identifiers

PMID11713292
PMCPMC100020
OpenAlexW2128934918

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.