Evidence map›Paper›PMID 11707425›Full record

ArticleThe EMBO journal2001

Non-homologous end-joining proteins are required for Agrobacterium T-DNA integration.

H van Attikum, P Bundock, P J Hooykaas

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 158 citations in OpenAlex.

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  14. Constitutive hyperproduction of sorbicillinoids inBiotechnology for biofuels · 2018
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  17. Review
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

H van AttikumInstitute of Molecular Plant Sciences, Leiden University, Clusius Laboratory, Wassenaarseweg 64, 2333 AL, Leiden, The Netherlands.
P Bundock
P J Hooykaas
Leiden University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Agrobacterium tumefaciens causes crown gall disease in dicotyledonous plants by introducing a segment of DNA (T-DNA), derived from its tumour-inducing (Ti) plasmid, into plant cells at infection sites. Besides these natural hosts, Agrobacterium can deliver the T-DNA also to monocotyledonous plants, yeasts and fungi. The T-DNA integrates randomly into one of the chromosomes of the eukaryotic host by an unknown process. Here, we have used the yeast Saccharomyces cerevisiae as a T-DNA recipient to demonstrate that the non-homologous end-joining (NHEJ) proteins Yku70, Rad50, Mre11, Xrs2, Lig4 and Sir4 are required for the integration of T-DNA into the host genome. We discovered a minor pathway for T-DNA integration at the telomeric regions, which is still operational in the absence of Rad50, Mre11 or Xrs2, but not in the absence of Yku70. T-DNA integration at the telomeric regions in the rad50, mre11 and xrs2 mutants was accompanied by gross chromosomal rearrangements.

Indexed as

Antigens, NuclearDNA HelicasesRecombination, GeneticSaccharomyces cerevisiae ProteinsSilent Information Regulator Proteins, Saccharomyces cerevisiaeAgrobacterium tumefaciensBase SequenceChromosome AberrationsDNA, BacterialDNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA Ligase ATPDNA LigasesElectrophoresis, Polyacrylamide GelEndodeoxyribonucleasesExodeoxyribonucleasesAntigens, Nuclearbacteriophage T7 induced DNA polymeraseDNA, BacterialDNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA HelicasesDNA Ligase ATPDNA LigasesDNL4 protein, S cerevisiaeEndodeoxyribonucleasesExodeoxyribonucleasesFungal Proteinshigh affinity DNA-binding factor, S cerevisiaeKu AutoantigenLIG4 protein, humanMRE11 protein, S cerevisiaeNuclear ProteinsRAD50 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSilent Information Regulator Proteins, Saccharomyces cerevisiaeSIR4 protein, S cerevisiaeT-DNAXRCC5 protein, humanXrcc6 protein, humanXRS2 protein, S cerevisiaeYKU70 protein, S cerevisiae

Identifiers

PMID11707425
PMCPMC125718
OpenAlexW2105373127

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.