Evidence map›Paper›PMID 11701886›Full record

ArticleThe Plant cell2001

Repression of the defense gene PR-10a by the single-stranded DNA binding protein SEBF.

B Boyle, N Brisson

Open access · greenAbstract read
In one paragraph

Article in The Plant cell, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
7.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 123 citations in OpenAlex.

  1. Review
  2. Article
  3. GhABP19, a Novel Germin-Like Protein FromFrontiers in plant science · 2019
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Impacts of pr-10a overexpression at the molecular and the phenotypic level.International journal of molecular sciences · 2013
    Article
  9. Review
  10. Article
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  13. Review
  14. Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 2 countries.

B BoyleDepartment of Biochemistry, Université de Montréal, Montréal, Québec, Canada H3C 3J7.
N Brisson
Institute of Agrobiological Sciences · JPUniversité de Montréal · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The potato pathogenesis-related gene PR-10a is transcriptionally activated in response to pathogen infection or elicitor treatment. Characterization of the cis-acting elements of the PR-10a promoter revealed the presence of a silencing element between residues -52 and -27 that contributes to transcriptional regulation. In this study, we have isolated a silencing element binding factor (SEBF) from potato tuber nuclei that binds to the coding strand of the silencing element in a sequence-specific manner. The consensus binding site of SEBF, PyTGTCNC, is present in a number of PR genes and shows striking similarity to the auxin response element. Mutational analysis of the PR-10a promoter revealed an inverse correlation between the in vitro binding of SEBF and the expression of PR-10a. SEBF was purified to homogeneity from potato tubers, and sequencing of the N terminus of the protein led to the isolation of a cDNA clone. Sequence analysis revealed that SEBF is homologous with chloroplast RNA binding proteins that possess consensus sequence-type RNA binding domains characteristic of heterogeneous nuclear ribonucleoproteins (hnRNPs). Overexpression of SEBF in protoplasts repressed the activity of a PR-10a reporter construct in a silencing element-dependent manner, confirming the role of SEBF as a transcriptional repressor.

Indexed as

Gene Expression Regulation, PlantPlant ProteinsAmino Acid SequenceBase SequenceCell NucleusChloroplastsCloning, MolecularDNA-Binding ProteinsDNA PrimersDNA, Single-StrandedMolecular Sequence DataNuclear ProteinsPlant LeavesPolymerase Chain ReactionPromoter Regions, GeneticRecombinant ProteinsDNA-Binding ProteinsDNA PrimersDNA, Single-StrandedNuclear ProteinsPBF-2 protein, Solanum tuberosumPlant ProteinsRecombinant ProteinsRepressor ProteinsRNA-Binding Proteins

Identifiers

PMID11701886
PMCPMC139469
OpenAlexW2164389777

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.