Evidence map›Paper›PMID 11698648›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2001

Regulation of cyclic peptide biosynthesis in a plant pathogenic fungus by a novel transcription factor.

K F Pedley, J D Walton

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
  2. Anaerobic gut fungi are an untapped reservoir of natural products.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Transcriptional regulatory elements in fungal secondary metabolism.Journal of microbiology (Seoul, Korea) · 2011
    Review
  10. Article
  11. Review
  12. Operons.Cellular and molecular life sciences : CMLS · 2009
    Review
  13. Article
  14. Article
  15. A gene cluster for secondary metabolism in oat: implications for the evolution of metabolic diversity in plants.Proceedings of the National Academy of Sciences of the United States of America · 2004
    Article
  16. Article
  17. Article
  18. Tox-boxes, fungal secondary metabolites, and plant disease.Proceedings of the National Academy of Sciences of the United States of America · 2001
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

K F PedleyDepartment of Energy-Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA.
J D Walton
Michigan State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Strains of the filamentous fungus Cochliobolus carbonum that produce the host-selective compound HC-toxin, a cyclic tetrapeptide, are highly virulent on certain genotypes of maize (Zea mays L.). Production of HC-toxin is under the control of a complex locus, TOX2, which is composed of at least seven linked and duplicated genes that are present only in toxin-producing strains of C. carbonum. One of these genes, TOXE, was earlier shown to be required for the expression of the other TOX2 genes. TOXE has four ankyrin repeats and a basic region similar to those found in basic leucine zipper (bZIP) proteins, but lacks any apparent leucine zipper. Here we show that TOXE is a DNA-binding protein that recognizes a ten-base motif (the "tox-box") without dyad symmetry that is present in the promoters of all of the known TOX2 genes. Both the basic region and the ankyrin repeats are involved in DNA binding. A region of TOXE that includes the first ankyrin repeat is necessary and sufficient for transcriptional activation in yeast. The data indicate that TOXE is the prototype of a new family of transcription factor, so far found only in plant-pathogenic fungi. TOXE plays a specific regulatory role in HC-toxin production and, therefore, pathogenicity by C. carbonum.

Indexed as

Amino Acid SequenceAscomycotaBinding SitesDNA-Binding ProteinsFungal ProteinsGenes, FungalMolecular Sequence DataPeptides, CyclicPromoter Regions, GeneticTranscriptional ActivationTranscription FactorsDNA-Binding ProteinsFungal ProteinsHC toxinPeptides, CyclicTOXE protein, Cochliobolus carbonumTranscription Factors

Identifiers

PMID11698648
PMCPMC61187
OpenAlexW1978409112

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.