Evidence map›Paper›PMID 11694574›Full record

ArticleMolecular biology of the cell2001

The N-terminal domain of the t-SNARE Vam3p coordinates priming and docking in yeast vacuole fusion.

R Laage, C Ungermann

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 54 citations in OpenAlex.

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  10. N-terminal domain of vacuolar SNARE Vam7p promotes trans-SNARE complex assembly.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
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  14. New links between vesicle coats and Rab-mediated vesicle targeting.Seminars in cell & developmental biology · 2011
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

R LaageUniversity of Heidelberg, Biochemie Zentrum Heidelberg, 69120 Heidelberg, Germany.
C Ungermann
Heidelberg University · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Homotypic fusion of yeast vacuoles requires a regulated sequence of events. During priming, Sec18p disassembles cis-SNARE complexes. The HOPS complex, which is initially associated with the cis-SNARE complex, then mediates tethering. Finally, SNAREs assemble into trans-complexes before the membranes fuse. The t-SNARE of the vacuole, Vam3p, plays a central role in the coordination of these processes. We deleted the N-terminal region of Vam3p to analyze the role of this domain in membrane fusion. The truncated protein (Vam3 Delta N) is sorted normally to the vacuole and is functional, because the vacuolar morphology is unaltered in this strain. However, in vitro vacuole fusion is strongly reduced due to the following reasons: Assembly, as well as disassembly of the cis-SNARE complex is more efficient on Vam3 Delta N vacuoles; however, the HOPS complex is not associated well with the Vam3 Delta N cis-complex. Thus, primed SNAREs from Vam3 Delta N vacuoles cannot participate efficiently in the reaction because trans-SNARE pairing is substantially reduced. We conclude that the N-terminus of Vam3p is required for coordination of priming and docking during homotypic vacuole fusion.

Indexed as

Adenosine TriphosphatasesSaccharomyces cerevisiae ProteinsVesicular Transport ProteinsAnimalsBinding SitesCarrier ProteinsEgtazic AcidFungal ProteinsGuanine Nucleotide Dissociation InhibitorsMembrane FusionMembrane ProteinsProtein Structure, TertiaryQa-SNARE ProteinsQb-SNARE ProteinsRabbitsSNARE Proteins1,2-bis(2-aminophenoxy)ethane-N,N,N',N'-tetraacetic acidAdenosine TriphosphatasesCarrier ProteinsEgtazic AcidFungal ProteinsGDP dissociation inhibitor 1Guanine Nucleotide Dissociation InhibitorsMembrane ProteinsQa-SNARE ProteinsQb-SNARE ProteinsSaccharomyces cerevisiae ProteinsSEC18 protein, S cerevisiaeSNARE ProteinsVAM3 protein, S cerevisiaeVesicular Transport ProteinsVPS33 protein, S cerevisiaeVTI1 protein, S cerevisiae

Identifiers

PMID11694574
PMCPMC60262
OpenAlexW2167510623

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.