Evidence map›Paper›PMID 11691944›Full record

ArticleNucleic acids research2001

Robust and efficient synthetic method for forming DNA microarrays.

P L Dolan, Y Wu, L K Ista, R L Metzenberg, M A Nelson, G P Lopez

Abstract read
In one paragraph

Article in Nucleic acids research, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Review
  2. Reversible DNA micro-patterning using the fluorous effect.Chemical communications (Cambridge, England) · 2017
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Facile DNA immobilization on surfaces through a catecholamine polymer.Angewandte Chemie (International ed. in English) · 2011
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Microcoding: the second step in DNA barcoding.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2005
    Review
  15. Microarray analysis of Escherichia coli O157:H7.World journal of gastroenterology · 2005
    Article
  16. An Activated GOPS-poly-Engineering in life sciences · 2005
    Article
  17. Article
  18. Development and assessment of microarray-based DNA fingerprinting in Eucalyptus grandis.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2004
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

P L DolanDepartment of Biology, University of New Mexico, Albuquerque, NM 87131, USA.
Y Wu
L K Ista
R L Metzenberg
M A Nelson
G P Lopez

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The field of DNA microarray technology has necessitated the cooperative efforts of interdisciplinary scientific teams to achieve its primary goal of rapidly measuring global gene expression patterns. A collaborative effort was established to produce a chemically reactive surface on glass slide substrates to which unmodified DNA will covalently bind for improvement of cDNA microarray technology. Using the p-aminophenyl trimethoxysilane (ATMS)/diazotization chemistry that was developed, microarrays were fabricated and analyzed. This immobilization method produced uniform spots containing equivalent or greater amounts of DNA than commercially available immobilization techniques. In addition, hybridization analyses of microarrays made with ATMS/diazotization chemistry showed very sensitive detection of the target sequence, two to three orders of magnitude more sensitive than the commercial chemistries. Repeated stripping and re-hybridization of these slides showed that DNA loss was minimal, allowing multiple rounds of hybridization. Thus, the ATMS/diazotization chemistry facilitated covalent binding of unmodified DNA, and the reusable microarrays that were produced showed enhanced levels of hybridization and very low background fluorescence.

Indexed as

AdsorptionCarbocyaninesDNADNA, FungalDNA ProbesFluorescenceFluorescent DyesGene Expression ProfilingGlassNeurospora crassaNucleic Acid HybridizationOligonucleotide Array Sequence AnalysisPolylysineReproducibility of ResultsSilanesCarbocyaninescyanine dye 3cyanine dye 5DNADNA, FungalDNA ProbesFluorescent DyesPolylysineSilanestrimethoxysilane

Identifiers

PMID11691944
PMCPMC60206

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.