Evidence map›Paper›PMID 11691930›Full record

ArticleNucleic acids research2001

Isolation and characterization of the activated B-cell factor 1 homolog in Caenorhabditis elegans.

L Nguyen, J Round, R O'Connell, P Geurts, M Funes-Duran, J Wong, G Jongeward, C A Vierra

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.1field-weighted citation impact, top 63% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 8 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

L NguyenDepartment of Biology, University of the Pacific, Stockton, CA 95211, USA.
J Round
R O'Connell
P Geurts
M Funes-Duran
J Wong
G Jongeward
C A Vierra
University of the Pacific · US

Funding

STRUCTURAL AND FUNCTIONAL ANALYSIS OF ABF-1 PROMOTERR15AI045767 · NIAID · UNIVERSITY OF THE PACIFIC-STOCKTON · PI VIERRA, CRAIG A · 2000 to 2003
$210k
NIAID NIH HHS R15 AI045767NIAID NIH HHS R15 AI45767-01A1
6 · The paper itself

Abstract

Members of the basic helix-loop-helix (bHLH) family of transcription factors regulate a wide array of developmental processes in many cell types, including cell fate specification, differentiation and morphogenesis. Our studies describe the cloning of a gene from the nematode Caenorhabditis elegans that is closely related to the vertebrate-activated B-cell factor (ABF) gene. The nematode gene product CeABF-1 was detected by northern blot analysis from RNA isolated from pooled nematodes representing different developmental stages. The developmental expression profile of CeABF-1 was shown by RT-PCR analysis to be predominantly expressed in the larval stages L3 and L4, with lower levels observed in the L2 larval stage and adult. We also show that CeABF-1 is capable of forming heterodimers with E2A proteins and binding E-box target sites. Mammalian cells transfected with CeABF-1 expression plasmids were capable of blocking E2A-mediated gene transcription, but full repression activity required the presence of two conserved amino acid residues found within the first helix of the CeABF-1 bHLH domain. These results suggest a conserved mechanism of gene repression between certain class II bHLH and class I bHLH proteins found in vertebrates and invertebrates.

Indexed as

Conserved SequenceDNA-Binding ProteinsAmino Acid SequenceAnimalsBase SequenceBasic Helix-Loop-Helix ProteinsCaenorhabditis elegansCaenorhabditis elegans ProteinsCloning, MolecularDimerizationDNAE-Box ElementsElectrophoretic Mobility Shift AssayGene Expression ProfilingGene Expression Regulation, DevelopmentalHeLa Cellsabf-1 protein, C elegansBasic Helix-Loop-Helix ProteinsCaenorhabditis elegans ProteinsDNADNA-Binding ProteinsMSC protein, humanRepressor ProteinsRNA, MessengerTCF3 protein, humanTranscription Factors

Identifiers

PMID11691930
PMCPMC60183
OpenAlexW2168231365

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.