Evidence map›Paper›PMID 11689691›Full record

ArticleMolecular and cellular biology2001

Highly frequent frameshift DNA synthesis by human DNA polymerase mu.

Y Zhang, X Wu, F Yuan, Z Xie, Z Wang

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 84 citations in OpenAlex.

  1. Review
  2. Structural and Molecular Kinetic Features of Activities of DNA Polymerases.International journal of molecular sciences · 2022
    Review
  3. Article
  4. Article
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  6. Article
  7. Review
  8. Article
  9. Article
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  11. Article
  12. Review
  13. Article
  14. Article
  15. DNA pol λ's extraordinary ability to stabilize misaligned DNA.Journal of the American Chemical Society · 2010
    Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Y ZhangGraduate Center for Toxicology, University of Kentucky, Lexington, Kentucky 40536, USA.
X Wu
F Yuan
Z Xie
Z Wang
University of Kentucky · US

Funding

MOLECULAR DISSECTION OF YEAST NUCLEOTIDE EXCISION REPAIRR01CA067978 · NCI · UNIVERSITY OF KENTUCKY · PI WANG, ZHIGANG · 1997 to 2006
$1.3M
MOLECULAR DISSECTION OF YEAST NUCLEOTIDE EXCISION REPAIRR55CA067978 · NCI · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI WANG, ZHIGANG · 1995 to 1995
–
NCI NIH HHS CA67978NCI NIH HHS R01 CA067978NCI NIH HHS R55 CA067978
6 · The paper itself

Abstract

DNA polymerase mu (Polmu) is a newly identified member of the polymerase X family. The biological function of Polmu is not known, although it has been speculated that human Polmu may be a somatic hypermutation polymerase. To help understand the in vivo function of human Polmu, we have performed in vitro biochemical analyses of the purified polymerase. Unlike any other DNA polymerases studied thus far, human Polmu catalyzed frameshift DNA synthesis with an unprecedentedly high frequency. In the sequence contexts examined, -1 deletion occurred as the predominant DNA synthesis mechanism opposite the single-nucleotide repeat sequences AA, GG, TT, and CC in the template. Thus, the fidelity of DNA synthesis by human Polmu was largely dictated by the sequence context. Human Polmu was able to efficiently extend mismatched bases mainly by a frameshift synthesis mechanism. With the primer ends, containing up to four mismatches, examined, human Polmu effectively realigned the primer to achieve annealing with a microhomology region in the template several nucleotides downstream. As a result, human Polmu promoted microhomology search and microhomology pairing between the primer and the template strands of DNA. These results show that human Polmu is much more prone to cause frameshift mutations than base substitutions. The biochemical properties of human Polmu suggest a function in nonhomologous end joining and V(D)J recombination through its microhomology searching and pairing activities but do not support a function in somatic hypermutation.

Indexed as

3' Flanking RegionBase PairingBase Pair MismatchCatalysisDNA-Directed DNA PolymeraseDNA, FungalDNA PrimersExodeoxyribonucleasesExodeoxyribonuclease VFrameshift MutationHumansRecombination, GeneticSaccharomycesSequence Homology, Nucleic AcidDNA-Directed DNA PolymeraseDNA, FungalDNA polymerase muDNA PrimersExodeoxyribonucleasesExodeoxyribonuclease V

Identifiers

PMID11689691
PMCPMC99967
OpenAlexW2090482045

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.