Evidence map›Paper›PMID 11689423›Full record

ArticleThe EMBO journal2001

X-ray structure of the orphan nuclear receptor RORbeta ligand-binding domain in the active conformation.

C Stehlin, J M Wurtz, A Steinmetz, E Greiner, R Schüle, D Moras, J P Renaud

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 121 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Case Report: A 3' splice site variation inFrontiers in genetics · 2024
    Article
  6. Review
  7. Article
  8. Article
  9. Recent advances in modulators of circadian rhythms: an update and perspective.Journal of enzyme inhibition and medicinal chemistry · 2020
    Review
  10. Article
  11. Article
  12. Identification of potent RORβ modulators: Scaffold variation.Bioorganic & medicinal chemistry letters · 2018
    Article
  13. Identification of an aminothiazole series of RORβ modulators.Bioorganic & medicinal chemistry letters · 2018
    Article
  14. Osteoprotection Through the Deletion of the Transcription Factor Rorβ in Mice.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2018
    Article
  15. Review
  16. The obesity-related pathology and Th17 cells.Cellular and molecular life sciences : CMLS · 2017
    Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

C StehlinLaboratoire de Biologie et Génomique Structurales (CNRS Unité Propre de Recherche 9004), Institut de Génétique et de Biologie Moléculaire et Cellulaire (CNRS/INSERM/Université Louis Pasteur), 1 rue Laurent Fries, BP 163, 67404 Illkirch, France.
J M Wurtz
A Steinmetz
E Greiner
R Schüle
D Moras
J P Renaud
Centre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The retinoic acid-related orphan receptor beta (RORbeta) exhibits a highly restricted neuronal-specific expression pattern in brain, retina and pineal gland. So far, neither a natural RORbeta target gene nor a functional ligand have been identified, and the physiological role of the receptor is not well understood. We present the crystal structure of the ligand-binding domain (LBD) of RORbeta containing a bound stearate ligand and complexed with a coactivator peptide. In the crystal, the monomeric LBD adopts the canonical agonist-bound form. The fatty acid ligand-coactivator peptide combined action stabilizes the transcriptionally active conformation. The large ligand-binding pocket is strictly hydrophobic on the AF-2 side and more polar on the beta-sheet side where the carboxylate group of the ligand binds. Site-directed mutagenesis experiments validate the significance of the present structure. Homology modeling of the other isotypes will help to design isotype-selective agonists and antagonists that can be used to characterize the physiological functions of RORs. In addition, our crystallization strategy can be extended to other orphan nuclear receptors, providing a powerful tool to delineate their functions.

Indexed as

Models, MolecularReceptors, Cytoplasmic and NuclearAmino Acid SequenceAnimalsBinding SitesCrystallography, X-RayHistone AcetyltransferasesLigandsMacromolecular SubstancesMolecular Sequence DataMutagenesis, Site-DirectedNuclear Receptor Coactivator 1Nuclear Receptor Subfamily 1, Group F, Member 2Peptide FragmentsProtein ConformationProtein Structure, TertiaryHistone AcetyltransferasesLigandsMacromolecular SubstancesNuclear Receptor Coactivator 1Nuclear Receptor Subfamily 1, Group F, Member 2Peptide FragmentsReceptors, Cell SurfaceReceptors, Cytoplasmic and Nuclearstearic acidStearic AcidsTranscription Factors

Identifiers

PMID11689423
PMCPMC125710
OpenAlexW2158479544

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.