Evidence map›Paper›PMID 11673438›Full record

ArticleJournal of bacteriology2001

Identification and inactivation of three group 2 sigma factor genes in Anabaena sp. strain PCC 7120.

I Y Khudyakov, J W Golden

Abstract read
In one paragraph

Article in Journal of bacteriology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Coordination of NProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. The small CaBMC microbiology · 2020
    Article
  3. Article
  4. Article
  5. Article
  6. Engineered transcriptional systems for cyanobacterial biotechnology.Frontiers in bioengineering and biotechnology · 2014
    Review
  7. Article
  8. Article
  9. Article
  10. Cyanobacterial heterocysts.Cold Spring Harbor perspectives in biology · 2010
    Review
  11. Sigma factors for cyanobacterial transcription.Gene regulation and systems biology · 2009
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

I Y KhudyakovDepartment of biology, Texas A & M University, College Station 77843-3258, USA.
J W Golden

Funding

Regulation of Cyanobacterial Multicellular DevelopmentR01GM036890 · NIGMS · TEXAS A&M UNIVERSITY SYSTEM · PI GOLDEN, JAMES WILLIAM · 1986 to 2007
$2.0M
NIGMS NIH HHS GM36890NIGMS NIH HHS R01 GM036890
6 · The paper itself

Abstract

Three new Anabaena sp. strain PCC 7120 genes encoding group 2 alternative sigma factors have been cloned and characterized. Insertional inactivation of sigD, sigE, and sigF genes did not affect growth on nitrate under standard laboratory conditions but did transiently impair the abilities of sigD and sigE mutant strains to establish diazotrophic growth. A sigD sigE double mutant, though proficient in growth on nitrate and still able to differentiate into distinct proheterocysts, was unable to grow diazotrophically due to extensive fragmentation of filaments upon nitrogen deprivation. This double mutant could be complemented by wild-type copies of sigD or sigE, indicating some degree of functional redundancy that can partially mask phenotypes of single gene mutants. However, the sigE gene was required for lysogenic development of the temperate cyanophage A-4L. Several other combinations of double mutations, especially sigE sigF, caused a transient defect in establishing diazotrophic growth, manifested as a strong and prolonged bleaching response to nitrogen deprivation. We found no evidence for developmental regulation of the sigma factor genes. luxAB reporter fusions with sigD, sigE, and sigF all showed slightly reduced expression after induction of heterocyst development by nitrogen stepdown. Phylogenetic analysis of cyanobacterial group 2 sigma factor sequences revealed that they fall into several subgroups. Three morphologically and physiologically distant strains, Anabaena sp. strain PCC 7120, Synechococcus sp. strain PCC 7002, and Synechocystis sp. strain PCC 6803 each contain representatives of four subgroups. Unlike unicellular strains, Anabaena sp. strain PCC 7120 has three additional group 2 sigma factors that cluster in subgroup 2.5b, which is perhaps specific for filamentous or heterocystous cyanobacteria.

Indexed as

AnabaenaBacterial ProteinsCloning, MolecularDNA-Directed RNA PolymerasesGene DeletionMolecular Sequence DataPhylogenySigma FactorTranscription FactorsBacterial ProteinsDNA-Directed RNA PolymerasesFliA protein, BacteriaRNA polymerase sigma 70sigE protein, BacteriaSigma FactorTranscription Factors

Identifiers

PMID11673438
PMCPMC95499

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.