ArticleGenetics2001
Anchored reference loci in loblolly pine (Pinus taeda L.) for integrating pine genomics.
Article in Genetics, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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Who cites it
29 citing papers in PubMed.
- Protocol development for somatic embryogenesis, SSR markers and genetic modification of Stipagrostis pennata (Trin.) De Winter.Plant methods · 2021Article
- Development and comparative genomic mapping of Dasypyrum villosum 6V#4S-specific PCR markers using transcriptome data.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- A Consensus Genetic Map for Pinus taeda and Pinus elliottii and Extent of Linkage Disequilibrium in Two Genotype-Phenotype Discovery Populations of Pinus taeda.G3 (Bethesda, Md.) · 2015Article
- Annotated genetic linkage maps of Pinus pinaster Ait. from a Central Spain population using microsatellite and gene based markers.BMC genomics · 2012Article
- EST-derived genic molecular markers: development and utilization for generating an advanced transcript map of chickpea.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine.BMC genomics · 2011Article
- Forest tree genomics: growing resources and applications.Nature reviews. Genetics · 2011Review
- An annotated genetic map of loblolly pine based on microsatellite and cDNA markers.BMC genetics · 2011Article
- Adventures in the enormous: a 1.8 million clone BAC library for the 21.7 Gb genome of loblolly pine.PloS one · 2011Article
- A reference integrated map for cultivated grapevine (Vitis vinifera L.) from three crosses, based on 283 SSR and 501 SNP-based markers.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008Article
- Article
- Synteny and chromosome evolution in the lepidoptera: evidence from mapping in Heliconius melpomene.Genetics · 2007Article
- Comparative genome mapping among Picea glauca, P. mariana x P. rubens and P. abies, and correspondence with other Pinaceae.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2006Article
- SSR mining in coffee tree EST databases: potential use of EST-SSRs as markers for the Coffea genus.Molecular genetics and genomics : MGG · 2006Article
- Transferable bread wheat EST-SSRs can be useful for phylogenetic studies among the Triticeae species.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2006Article
- Article
- From famine to feast? Selecting nuclear DNA sequence loci for plant species-level phylogeny reconstruction.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2006Review
- Comparison of quantitative trait loci for adaptive traits between oak and chestnut based on an expressed sequence tag consensus map.Genetics · 2006Article
- A composite linkage map from two crosses for the species complex Picea mariana x Picea rubens and analysis of synteny with other Pinaceae.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2005Article
- Evaluation of cleaved amplified polymorphic sequence markers for Chamaecyparis obtusa based on expressed sequence tag information from Cryptomeria japonica.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2004Article
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Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Anchored reference loci provide a framework for comparative mapping. They are landmarks to denote conserved chromosomal segments, allowing the synthesis of genetic maps from multiple sources. We evaluated 90 expressed sequence tag polymorphisms (ESTPs) from loblolly pine (Pinus taeda L.) for this function. Primer sets were assayed for amplification and polymorphism in six pedigrees, representing two subgenera of Pinus and a distant member of the Pinaceae, Douglas-fir (Pseudotsuga menziesii [Mirb.] Franco). On average, 89% of primer sets amplified in four species of subgenus Pinus, 49% in one species of subgenus Strobus, and 22% in Douglas-fir. Polymorphisms were detected for 37-61% of the ESTPs within each pedigree. Comparative mapping in loblolly and slash pine (P. elliottii Englm.) revealed that ESTPs mapped to the same location. Disrupted synteny or significant disruptions in colinearity were not detected. Thirty-five ESTPs met criteria established for anchor loci. The majority of those that did not meet these criteria were excluded when map location was known in only a single species. Anchor loci provide a unifying tool for the community, facilitating the creation of a "generic" pine map and serving as a foundation for studies on genome organization and evolution.
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