Evidence map›Paper›PMID 11597998›Full record

ArticleThe EMBO journal2001

Crystal structures of NK1-heparin complexes reveal the basis for NK1 activity and enable engineering of potent agonists of the MET receptor.

D Lietha, D Y Chirgadze, B Mulloy, T L Blundell, E Gherardi

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 111 citations in OpenAlex.

  1. Review
  2. Article
  3. 3-Computational and structural biotechnology journal · 2022
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. BFMP: a method for discretizing and visualizing pyranose conformations.Journal of chemical information and modeling · 2014
    Article
  15. Docking server for the identification of heparin binding sites on proteins.Journal of chemical information and modeling · 2014
    Article
  16. Article
  17. Demystifying heparan sulfate-protein interactions.Annual review of biochemistry · 2014
    Review
  18. MET: a critical player in tumorigenesis and therapeutic target.Cold Spring Harbor perspectives in biology · 2013
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

D LiethaGrowth Factors Group, MRC Centre, Hills Road, Cambridge CB2 2QH, UK.
D Y Chirgadze
B Mulloy
T L Blundell
E Gherardi

Funding

Wellcome Trust
6 · The paper itself

Abstract

NK1 is a splice variant of the polypeptide growth factor HGF/SF, which consists of the N-terminal (N) and first kringle (K) domain and requires heparan sulfate or soluble heparin for activity. We describe two X-ray crystal structures of NK1-heparin complexes that define a heparin-binding site in the N domain, in which a major role is played by R73, with further contributions from main chain atoms of T61, K63 and G79 and the side chains of K60, T61, R76, K62 and K58. Mutagenesis experiments demonstrate that heparin binding to this site is essential for dimerization in solution and biological activity of NK1. Heparin also comes into contact with a patch of positively charged residues (K132, R134, K170 and R181) in the K domain. Mutation of these residues yields NK1 variants with increased biological activity. Thus, we uncover a complex role for heparan sulfate in which binding to the primary site in the N domain is essential for biological activity whereas binding to the K domain reduces activity. We exploit the interaction between heparin and the K domain site in order to engineer NK1 as a potent receptor agonist and suggest that dual (positive and negative) control may be a general mechanism of heparan sulfate-dependent regulation of growth factor activity.

Indexed as

AnimalsBinding SitesCell LineCrystallography, X-RayDimerizationDogsDrug DesignHeparan SulfateHeparinHepatocyte Growth FactorHumansKidneyKringlesMacromolecular SubstancesModels, MolecularMutagenesis, Site-DirectedHeparan SulfateHeparinHepatocyte Growth FactorMacromolecular SubstancesPeptide FragmentsProto-Oncogene Proteins c-metRecombinant Fusion Proteins

Identifiers

PMID11597998
PMCPMC125671
OpenAlexW1997654602

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.