Evidence map›Paper›PMID 11593025›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2001

Nuclear relocation of a transactivator subunit precedes target gene activation.

C Francastel, W Magis, M Groudine

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 136 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Review
  8. Olfactory receptor genes expressed in distinct lineages are sequestered in different nuclear compartments.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Specific positioning of the casein gene cluster in active nuclear domains in luminal mammary epithelial cells.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2011
    Article
  16. Article
  17. Article
  18. Article
  19. Nuclear stress bodies.Cold Spring Harbor perspectives in biology · 2010
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

C FrancastelDivision of Basic Sciences, Fred Hutchinson Cancer Research, Seattle, WA 98109, USA.
W Magis
M Groudine
University of Washington · USFred Hutch Cancer Center · US

Funding

MAINTENANCE OF GENE EXPRESSION IN THE RED CELL LINEAGER01HL065440 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GROUDINE, MARK T · 2000 to 2018
$12.4M
FUNCTION OF HUMAN &MOUSE B GLOBIN LOCUS CONTROL REGIONSR37DK044746 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GROUDINE, MARK T · 1997 to 2016
$12.3M
FUNCTION OF THE HUMAN B-GLOBIN LOCUS CONTROL REGION-LCRR01DK044746 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GROUDINE, MARK T · 1992 to 1996
–
NHLBI NIH HHS HL65440NHLBI NIH HHS R01 HL065440NIDDK NIH HHS DK44746NIDDK NIH HHS R37 DK044746
6 · The paper itself

Abstract

Murine erythroleukemia (MEL) cells are a model system to study reorganization of the eukaryotic nucleus during terminal differentiation. Upon chemical induction, MEL cells undergo erythroid differentiation, leading to activation of globin gene expression. Both processes strongly depend on the transcriptional activator NF-E2. Before induction of differentiation, both subunits of the NF-E2 heterodimer are present, but little DNA-binding activity is detectable. Using immunofluorescence microscopy, we show that the two NF-E2 subunits occupy distinct nuclear compartments in uninduced MEL cells; the smaller subunit NF-E2p18 is found primarily in the centromeric heterochromatin compartment, whereas the larger subunit NF-E2p45 occupies the euchromatin compartment. Concomitant with the commitment period of differentiation that precedes globin gene activation, NF-E2p18, along with other transcriptional repressors, relocates to the euchromatin compartment. Thus, relocation of NF-E2 p18 may be a rate-limiting step in formation of an active NF-E2 complex. To understand the mechanisms of NF-E2 localization, we show that centromeric targeting of NF-E2p18 requires dimerization, but not with an erythroid-specific partner, and that the transactivation domain of NF-E2p45 may be necessary and sufficient to prevent its localization in centromeric heterochromatin. Finally, using fluorescence in situ hybridization, we show that, upon differentiation, the beta-globin gene loci relocate away from heterochromatin compartments to euchromatin. This relocation correlates with both transcriptional activation of the globin locus and relocation of NF-E2p18 away from heterochromatin, suggesting that these processes are linked.

Indexed as

Transcriptional ActivationActive Transport, Cell NucleusAnimalsCell DifferentiationCell LineCell NucleusCentromereDimerizationDNA-Binding ProteinsErythroid-Specific DNA-Binding FactorsGlobinsHeterochromatinMafK Transcription FactorMiceNF-E2 Transcription FactorNF-E2 Transcription Factor, p45 SubunitDNA-Binding ProteinsErythroid-Specific DNA-Binding FactorsGlobinsHeterochromatinMafk protein, mouseMafK Transcription FactorNfe2 protein, mouseNF-E2 Transcription FactorNF-E2 Transcription Factor, p45 SubunitProtein IsoformsTrans-ActivatorsTranscription Factors

Identifiers

PMID11593025
PMCPMC59778
OpenAlexW2092324010

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.