Evidence map›Paper›PMID 11587507›Full record

ArticlePlant molecular biology2001

Analysis of barley chloroplast psbD light-responsive promoter elements in transplastomic tobacco.

K E Thum, M Kim, D T Morishige, C Eibl, H U Koop, J E Mullet

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Comparative Analysis of ChloroplastFrontiers in plant science · 2017
    Article
  11. Article
  12. Article
  13. Review
  14. Evolutionary rewiring: a modified prokaryotic gene-regulatory pathway in chloroplasts.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2013
    Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

K E ThumDepartment of Biochemistry and Biophysics, Texas A&M University, College Station 77843, USA.
M Kim
D T Morishige
C Eibl
H U Koop
J E Mullet

Funding

PHS HHS 37987
6 · The paper itself

Abstract

The plastid gene psbD encodes D2, a photosystem II reaction center chlorophyll-binding protein. psbD is transcribed from a conserved chloroplast promoter that is activated by blue, white, or UV-A light. In this study, various forms of the barley (Hordeum vulgare L.) chloroplast psbD-LRP were fused to the uidA reporter gene and introduced into the tobacco (Nicotiana tabacum L.) plastid genome through homologous recombination. Primer extension analysis of transcripts from the psbD-LRP-uidA construct showed that the barley psbD-LRP was activated in tobacco by blue or white light. Transcription from this construct was also regulated by circadian cycling indicating that the barley psbD-LRP could respond to light modulated regulatory pathways in tobacco. Mutation of the psbD-LRP prokaryotic -10 promoter element reduced transcription to very low levels in all light regimes. In contrast, mutation of a prokaryotic -35 promoter element had no effect on transcription from the psbD-LRP. Deletion or mutation of an upstream activating element, the AAG-box (-36 to -64), also reduced transcription from the construct to very low levels. In contrast, deletion of the upstream PGT-box (-71 to -100) did not alter promoter activation by blue light, or responsiveness to circadian cycling. These in vivo studies confirm the importance of the psbD-LRP -10 promoter element and AAG-box in light regulation and demonstrate that these elements are sufficient to mediate circadian cycling of the barley psbD promoter.

Indexed as

Plants, ToxicBase SequenceBinding SitesCircadian RhythmDNA, ChloroplastGene Expression Regulation, PlantGlucuronidaseHordeumLightLight-Harvesting Protein ComplexesMolecular Sequence DataNicotianaPhotosynthetic Reaction Center Complex ProteinsPhotosystem II Protein ComplexPlants, Genetically ModifiedPromoter Regions, GeneticDNA, ChloroplastGlucuronidaseLight-Harvesting Protein ComplexesPhotosynthetic Reaction Center Complex ProteinsPhotosystem II Protein ComplexRecombinant Fusion Proteins

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.