Evidence map›Paper›PMID 11585930›Full record

ArticleMolecular and cellular biology2001

The HOX homeodomain proteins block CBP histone acetyltransferase activity.

W F Shen, K Krishnan, H J Lawrence, C Largman

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 117 citations in OpenAlex.

  1. Trial
  2. Review
  3. Toward a cell-type-specific lung HOX code.Frontiers in cell and developmental biology · 2026
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  4. Transcription ofJournal of developmental biology · 2023
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  5. Journal of Cancer · 2023
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  7. Article
  8. MiR-126 Regulates Properties of SOX9Stem cell reports · 2020
    Article
  9. eLife · 2020
    Article
  10. Review
  11. Review
  12. General Anesthesia and Young Brain: What is New?Journal of neurosurgical anesthesiology · 2018
    Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

W F ShenDepartment of Medicine, VA Medical Center and University of California, San Francisco, California 94121, USA. wfshen@itsa.ucsf.edu
K Krishnan
H J Lawrence
C Largman
San Francisco VA Medical Center · US

Funding

MECHANISM OF HOXA9 &MEIS1 PROTEIN INDUCED LEUKEMIAR01CA080029 · NCI · NORTHERN CALIFORNIA INSTITUTE RES &EDUC · PI LARGMAN, COREY · 1999 to 2008
$2.6M
NEW HOMEBOX GENES IN SCARLESS FETAL WOUND HEALINGR01GM055814 · NIGMS · NORTHERN CALIFORNIA INSTITUTE RES &EDUC · PI LARGMAN, COREY · 1998 to 2001
$428k
ANTIBODY SPECIFIC FOR HUMAN HOMEOBOX TRANSCRIPTION FACBN44DK042219 · NIDDK · BERKELEY ANTIBODY COMPANY · 1994 to 1996
–
NCI NIH HHS 1R01CA80029-1NCI NIH HHS R01 CA080029NIDDK NIH HHS N44-DK-4-2219NIGMS NIH HHS 1R01GM55814-01A2
6 · The paper itself

Abstract

Despite the identification of PBC proteins as cofactors that provide DNA affinity and binding specificity for the HOX homeodomain proteins, HOX proteins do not demonstrate robust activity in transient-transcription assays and few authentic downstream targets have been identified for these putative transcription factors. During a search for additional cofactors, we established that each of the 14 HOX proteins tested, from 11 separate paralog groups, binds to CBP or p300. All six isolated homeodomain fragments tested bind to CBP, suggesting that the homeodomain is a common site of interaction. Surprisingly, CBP-p300 does not form DNA binding complexes with the HOX proteins but instead prevents their binding to DNA. The HOX proteins are not substrates for CBP histone acetyltransferase (HAT) but instead inhibit the activity of CBP in both in vitro and in vivo systems. These mutually inhibitory interactions are reflected by the inability of CBP to potentiate the low levels of gene activation induced by HOX proteins in a range of reporter assays. We propose two models for HOX protein function: (i) HOX proteins may function without CBP HAT to regulate transcription as cooperative DNA binding molecules with PBX, MEIS, or other cofactors, and (ii) the HOX proteins may inhibit CBP HAT activity and thus function as repressors of gene transcription.

Indexed as

Amino Acid MotifsAnimalsEnzyme InhibitorsGlutathione TransferaseHomeodomain ProteinsLuciferasesModels, BiologicalNuclear ProteinsPlasmidsPrecipitin TestsProtein BindingProtein Structure, TertiaryTrans-ActivatorsTranscription, GeneticTransfectionEnzyme InhibitorsGlutathione TransferaseHomeodomain ProteinsLuciferasesNuclear ProteinsTrans-Activators

Identifiers

PMID11585930
PMCPMC99922
OpenAlexW2148381770

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.