Evidence map›Paper›PMID 11581411›Full record

ArticleJournal of virology2001

Identification of genes involved in the host response to neurovirulent alphavirus infection.

C Johnston, W Jiang, T Chu, B Levine

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
7.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 97 citations in OpenAlex.

  1. Review
  2. Review
  3. Sequence Diversity in the 3' Untranslated Region of Alphavirus Modulates IFIT2-Dependent Restriction in a Cell Type-Dependent Manner.Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. RNASeq Analysis ofViruses · 2019
    Article
  9. The neuroimmune response to West Nile virus.Journal of neurovirology · 2014
    Review
  10. Potential roles of microglial cell progranulin in HIV-associated CNS pathologies and neurocognitive impairment.Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology · 2014
    Review
  11. Article
  12. Article
  13. Cellular effects of progranulin in health and disease.Journal of molecular neuroscience : MN · 2011
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

C JohnstonDepartment of Medicine, Columbia University College of Physicians & Surgeons, New York, New York 10032, USA.
W Jiang
T Chu
B Levine
Columbia University · USAlbert Einstein College of Medicine · US

Funding

BCL2 AND BECLIN AND ALPHAVIRUS PATHOGENESISR01AI044157 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI LEVINE, BETH C · 1999 to 2003
$1.3M
Dynamic Reactivation of Herpes Simplex Virus-2 and the Genital Mucosal ResponseK23AI079394 · NIAID · UNIVERSITY OF WASHINGTON · PI JOHNSTON, CHRISTINE MICHELLE · 2008 to 2011
$491k
MOLECULAR DETERMINANTS OF ALPHAVIRUS INDUCED APOPTOSISR29AI040246 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI LEVINE, BETH C · 1996 to 2000
$103k
NIAID NIH HHS K23 AI079394NIAID NIH HHS R01 AI44157NIAID NIH HHS R29AI40246
6 · The paper itself

Abstract

Single-amino-acid mutations in Sindbis virus proteins can convert clinically silent encephalitis into uniformly lethal disease. However, little is known about the host gene response during avirulent and virulent central nervous system (CNS) infections. To identify candidate host genes that modulate alphavirus neurovirulence, we utilized GeneChip Expression analysis to compare CNS gene expression in mice infected with two strains of Sindbis virus that differ by one amino acid in the E2 envelope glycoprotein. Infection with Sindbis virus, dsTE12H (E2-55 HIS), resulted in 100% mortality in 10-day-old mice, whereas no disease was observed in mice infected with dsTE12Q (E2-55 GLN). dsTE12H, compared with dsTE12Q, replicated to higher titers in mouse brain and induced more CNS apoptosis. Infection with the neurovirulent dsTE12H strain was associated with both a greater number of host genes with increased expression and greater changes in levels of host gene expression than was infection with the nonvirulent dsTE12Q strain. In particular, dsTE12H infection resulted in greater increases in the levels of mRNAs encoding chemokines, proteins involved in antigen presentation and protein degradation, complement proteins, interferon-regulated proteins, and mitochondrial proteins. At least some of these increases may be beneficial for the host, as evidenced by the demonstration that enforced expression of the antiapoptotic mitochondrial protein peripheral benzodiazepine receptor (PBR) protects neonatal mice against lethal Sindbis virus infection. Thus, our findings identify specific host genes that may play a role in the host protective or pathologic response to neurovirulent Sindbis virus infection.

Indexed as

Gene ExpressionSindbis VirusAlphavirus InfectionsAnimalsApoptosisBrainChemokinesImmunohistochemistryInterferonsMiceReceptors, GABA-AReverse Transcriptase Polymerase Chain ReactionRNA, MessengerVirus ReplicationChemokinesInterferonsReceptors, GABA-ARNA, Messenger

Identifiers

PMID11581411
PMCPMC114617
OpenAlexW2159881591

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.