Evidence map›Paper›PMID 11574583›Full record

ArticleJournal of clinical microbiology2001

Spoligotype diversity of Mycobacterium bovis strains isolated in France from 1979 to 2000.

N Haddad, A Ostyn, C Karoui, M Masselot, M F Thorel, S L Hughes, J Inwald, R G Hewinson, B Durand

Abstract read
In one paragraph

Article in Journal of clinical microbiology, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed.

  1. Article
  2. Genetic Diversity and Population Structure ofPathogens (Basel, Switzerland) · 2023
    Article
  3. Article
  4. Review
  5. Evaluation of the Presence and Viability ofFoods (Basel, Switzerland) · 2021
    Article
  6. Multispacer Sequence Typing forFrontiers in veterinary science · 2021
    Article
  7. Article
  8. Genotype Diversity ofFrontiers in veterinary science · 2020
    Article
  9. Article
  10. Accurate Phylogenetic Relationships AmongFrontiers in microbiology · 2019
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

N HaddadSecteur des Mycobactéries, Unité des Zoonoses Bactériennes, Agence Française de Sécurité Sanitaire des Aliments, Maisons-Alfort, France. haddad@vet-alfort.fr
A Ostyn
C Karoui
M Masselot
M F Thorel
S L Hughes
J Inwald
R G Hewinson
B Durand

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The molecular fingerprints of 1,349 isolates of Mycobacterium bovis received between 1979 and August 2000 at Agence Française de Sécurité Sanitaire des Aliments (Afssa) have been obtained by spoligotyping. The majority of the isolates (1,266) were obtained from cattle living in France. An apparently high level of heterogeneity was observed between isolates. One hundred sixty-one spoligotypes were observed in total, of which 153 were from French isolates. The two predominant spoligotypes, designated BCG-like and GB54, accounted for 26 and 12% of the isolates, respectively. In addition, 84% of the spoligotypes were found fewer than 10 times. Analysis of the results by clustering and parsimony-based algorithms revealed that the majority of the spoligotypes were closely related. The predominant spoligotype was identical to that of the vaccine strain Mycobacterium bovis BCG, which was isolated in France at the end of the 19th century. Some spoligotypes were closely associated with restricted geographical areas. Interestingly, some spoligotypes, which were frequently observed in France, were also observed in neighboring countries. Conversely, few spoligotypes were common to France and England, and those that were shared were observed at very different frequencies. This last point illustrates the potential role for an international data bank, which could help trace the spread of M. bovis across national borders.

Indexed as

Bacterial Typing TechniquesAnimalsCattleCluster AnalysisFranceMycobacterium bovisOligonucleotidesPhylogenyPolymorphism, GeneticRepetitive Sequences, Nucleic AcidTuberculosis, BovineOligonucleotides

Identifiers

PMID11574583
PMCPMC88399

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.