Evidence map›Paper›PMID 11572940›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2001

Extraocular muscle is defined by a fundamentally distinct gene expression profile.

J D Porter, S Khanna, H J Kaminski, J S Rao, A P Merriam, C R Richmonds, P Leahy, J Li, F H Andrade

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed.

  1. Trial
  2. Review
  3. Extreme Tolerance of Extraocular Muscles to Diseases and Aging: Why and How?International journal of molecular sciences · 2024
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Relationship between gene expression networks and muscle contractile physiology differences in Anolis lizards.Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology · 2022
    Article
  11. Layered evolution of gene expression in "superfast" muscles for courtship.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Review
  19. Review
  20. Extraocular muscle function is impaired inThe Journal of general physiology · 2019
    Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

J D PorterDepartment of Ophthalmology, Case Western Reserve University, Cleveland, OH 44106, USA. jdp7@po.cwru.edu
S Khanna
H J Kaminski
J S Rao
A P Merriam
C R Richmonds
P Leahy
J Li
F H Andrade

Funding

TISSUE CULTURE AND HYBRIDOMA MODULEP30EY011373 · NEI · CASE WESTERN RESERVE UNIVERSITY · PI Irina A Pikuleva · 1997 to 2026
$17.7M
DETERMINANTS OF EXTRAOCULAR MUSCLE FUNCTIONR01EY012998 · NEI · UNIVERSITY OF KENTUCKY · PI ANDRADE, FRANCISCO H · 2001 to 2010
$2.8M
SARCOLEMMAL ORGANIZATION OF EXTRACULAR MUSCLER01EY012779 · NEI · CASE WESTERN RESERVE UNIVERSITY · PI PORTER, JOHN D · 2000 to 2004
$1.6M
CELL AND MOLECULAR DIVERSITY OF EXTRAOCULAR MUSCLER01EY009834 · NEI · UNIVERSITY OF KENTUCKY · PI PORTER, JOHN D · 1993 to 2003
$906k
NITRIC OXIDE IN NORMAL AND DISEASED OCULAR MUSCLER01EY011998 · NEI · CASE WESTERN RESERVE UNIVERSITY · PI KAMINSKI, HENRY J · 1998 to 2000
$171k
NEI NIH HHS EY09834NEI NIH HHS EY11998NEI NIH HHS EY12779NEI NIH HHS EY12998NEI NIH HHS P30 EY011373NEI NIH HHS P30 EY11373NEI NIH HHS R01 EY012779NEI NIH HHS R01 EY012998
6 · The paper itself

Abstract

Skeletal muscle fibers are defined by patterned covariation of key traits that determine contractile and metabolic characteristics. Although the functional properties of most skeletal muscles result from their proportional content of a few conserved muscle fiber types, some, typically craniofacial, muscles exhibit fiber types that appear to lie outside the common phenotypic range. We analyzed gene expression profiles of three putative muscle classes, limb, masticatory, and extraocular muscle (EOM), in adult mice by high-density oligonucleotide arrays. Pairwise comparisons using conservative acceptance criteria identified expression differences in 287 genes between EOM and limb and/or masticatory muscles. Use of significance analysis of microarrays methodology identified up to 400 genes as having an EOM-specific expression pattern. Genes differentially expressed in EOM reflect key aspects of muscle biology, including transcriptional regulation, sarcomeric organization, excitation-contraction coupling, intermediary metabolism, and immune response. These patterned differences in gene expression define EOM as a distinct muscle class and may explain the unique response of these muscles in neuromuscular diseases.

Indexed as

Gene ExpressionAnimalsGene Expression ProfilingMaleMasticatory MusclesMiceMice, Inbred C57BLMuscle, SkeletalNeuromuscular DiseasesOculomotor MusclesOligonucleotide Array Sequence AnalysisPhenotypeSignal TransductionTranscription FactorsTranscription Factors

Identifiers

PMID11572940
PMCPMC59827

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.