Evidence map›Paper›PMID 11571287›Full record

ArticleThe Journal of biological chemistry2001

Effect of thymine glycol on transcription elongation by T7 RNA polymerase and mammalian RNA polymerase II.

S Tornaletti, L S Maeda, D R Lloyd, D Reines, P C Hanawalt

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 91 citations in OpenAlex.

  1. Review
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  7. Review
  8. Review
  9. The DNA damage response to transcription stress.Nature reviews. Molecular cell biology · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

S TornalettiDepartment of Biological Sciences, Stanford University, Stanford, California 94305-5020, USA.
L S Maeda
D R Lloyd
D Reines
P C Hanawalt
Stanford University · USEmory University · US

Funding

Role of transcription in genomic stabilityR01CA077712 · NCI · STANFORD UNIVERSITY · PI HANAWALT, PHILIP COURTLAND · 1998 to 2016
$5.6M
RNA POLYMERASE II ELONGATION COMPLEX--STRUCTURE/FUNCTIONR01GM046331 · NIGMS · EMORY UNIVERSITY · PI REINES, DANIEL · 1991 to 2013
$3.5M
Role of transcription in genomic stabilityR56CA077712 · NCI · STANFORD UNIVERSITY · PI HANAWALT, PHILIP COURTLAND · 2008 to 2008
$328k
NCI NIH HHS CA-77712NCI NIH HHS R01 CA077712NCI NIH HHS R56 CA077712NIGMS NIH HHS R01 GM046331
6 · The paper itself

Abstract

Thymine glycols are formed in DNA by exposure to ionizing radiation or oxidative stress. Although these lesions are repaired by the base excision repair pathway, they have been shown also to be subject to transcription-coupled repair. A current model for transcription-coupled repair proposes that RNA polymerase II arrested at a DNA lesion provides a signal for recruitment of the repair enzymes to the lesion site. Here we report the effect of thymine glycol on transcription elongation by T7 RNA polymerase and RNA polymerase II from rat liver. DNA substrates containing a single thymine glycol located either in the transcribed or nontranscribed strand were used to carry out in vitro transcription. We found that thymine glycol in the transcribed strand blocked transcription elongation by T7 RNA polymerase approximately 50% of the time but did not block RNA polymerase II. Thymine glycol in the nontranscribed strand did not affect transcription by either polymerase. These results suggest that arrest of RNA polymerase elongation by thymine glycol is not necessary for transcription-coupled repair of this lesion. Additional factors that recognize and bind thymine glycol in DNA may be required to ensure RNA polymerase arrest and the initiation of transcription-coupled repair in vivo.

Indexed as

Transcription, GeneticAnimalsBase SequenceChromatography, High Pressure LiquidDNADNA, CircularDNA-Directed RNA PolymerasesLiverOligonucleotidesOxidative StressPhosphorylationRatsRNARNA Polymerase IIThymineTime Factorsbacteriophage T7 RNA polymeraseDNADNA, CircularDNA-Directed RNA PolymerasesOligonucleotidesRNARNA Polymerase IIThyminethymine glycolViral Proteins

Identifiers

PMID11571287
PMCPMC3373304
OpenAlexW2080058548

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.