Evidence map›Paper›PMID 11566892›Full record

ArticleThe EMBO journal2001

The structure of an AspRS-tRNA(Asp) complex reveals a tRNA-dependent control mechanism.

L Moulinier, S Eiler, G Eriani, J Gangloff, J C Thierry, K Gabriel, W H McClain, D Moras

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 100 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Mitochondrial RNA in Inflammation.International journal of biological sciences · 2025
    Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Emergence and evolution.Topics in current chemistry · 2014
    Review
  16. Article
  17. Article
  18. Mapping hidden potential identity elements by computing the average discriminating power of individual tRNA positions.DNA research : an international journal for rapid publication of reports on genes and genomes · 2012
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

L MoulinierUPR 9004, Laboratoire de Biologie et Génomique Structurales, Institut de Génétique et de Biologie Moléculaire et Cellulaire, CNRS/INSERM/ULP, 1 rue Laurent Fries, BP 163, 67404 Illkirch Cedex, France.
S Eiler
G Eriani
J Gangloff
J C Thierry
K Gabriel
W H McClain
D Moras
Centre National de la Recherche Scientifique · FRDescartes (Belgium) · BEUniversity of Wisconsin–Madison · US

Funding

STRUCTURE AND FUNCTION OF E COLI TRNAR01GM042123 · NIGMS · UNIVERSITY OF WISCONSIN MADISON · PI MCCLAIN, WILLIAM H · 1988 to 2004
$1.5M
NIGMS NIH HHS GM42123NIGMS NIH HHS R01 GM042123
6 · The paper itself

Abstract

The 2.6 A resolution crystal structure of an inactive complex between yeast tRNA(Asp) and Escherichia coli aspartyl-tRNA synthetase reveals the molecular details of a tRNA-induced mechanism that controls the specificity of the reaction. The dimer is asymmetric, with only one of the two bound tRNAs entering the active site cleft of its subunit. However, the flipping loop, which controls the proper positioning of the amino acid substrate, acts as a lid and prevents the correct positioning of the terminal adenosine. The structure suggests that the acceptor stem regulates the loop movement through sugar phosphate backbone- protein interactions. Solution and cellular studies on mutant tRNAs confirm the crucial role of the tRNA three-dimensional structure versus a specific recognition of bases in the control mechanism.

Indexed as

Aspartate-tRNA LigaseBase SequenceBinding SitesCell DivisionCrystallography, X-RayEscherichia coliGene DeletionHydrogen BondingMacromolecular SubstancesModels, MolecularMolecular Sequence DataProtein SubunitsRNA, Transfer, AspSaccharomyces cerevisiaeSpecies SpecificityAspartate-tRNA LigaseMacromolecular SubstancesProtein SubunitsRNA, Transfer, Asp

Identifiers

PMID11566892
PMCPMC125622
OpenAlexW2077171101

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.