Evidence map›Paper›PMID 11566887›Full record

ArticleThe EMBO journal2001

The role of the -50 region of the human gamma-globin gene in switching.

M S Ristaldi, D Drabek, J Gribnau, D Poddie, N Yannoutsous, A Cao, F Grosveld, A M Imam

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2001. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

M S RistaldiDepartment of Cell Biology and Genetics, Erasmus University, Rotterdam, The Netherlands.
D Drabek
J Gribnau
D Poddie
N Yannoutsous
A Cao
F Grosveld
A M Imam
Institute of History of Mediterranean Europe · ITErasmus University Rotterdam · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During the switch from human gamma- (fetal) to beta- (adult) globin gene expression, the gamma and beta genes are expressed competitively by an alternating transcription mechanism. The -50 region of the gamma gene promoter has been proposed to be responsible for the early competitive advantage of the gamma genes and to act as a stage selector element (SSE) in hemoglobin switching. We analyzed the effect of mutating the -50 region of the gamma gene in the presence of a competing beta gene in transgenic mice. This shows that the -50 region does not affect silencing of the beta gene in early development and does not act as a stage selector. However, it affects the ratio of gamma versus beta gene expression in the early, but not later, stages of fetal development. Interestingly, both the wild-type and mutant minilocus constructs show a higher frequency of alternate transcription than observed in the complete locus, suggesting that sequences normally present between the gamma and beta genes facilitate the interaction of the locus control region (LCR) and beta-globin gene in the complete locus.

Indexed as

Gene Expression Regulation, DevelopmentalPromoter Regions, GeneticAnimalsDichlororibofuranosylbenzimidazoleDNA-Binding ProteinsGene SilencingGlobinsHumansIn Situ Hybridization, FluorescenceKineticsKruppel-Like Transcription FactorsLiverLocus Control RegionMiceMice, TransgenicModels, GeneticDichlororibofuranosylbenzimidazoleDNA-Binding Proteinserythroid Kruppel-like factorGlobinsKruppel-Like Transcription FactorsNucleic Acid Synthesis InhibitorsRNA, MessengerTranscription Factors

Identifiers

PMID11566887
PMCPMC125618
OpenAlexW1979763199

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.